Click here to switch to the map view.

The map label for this gene is cycM [H]

Identifier: 110678587

GI number: 110678587

Start: 1222892

End: 1223395

Strand: Direct

Name: cycM [H]

Synonym: RD1_1262

Alternate gene names: 110678587

Gene position: 1222892-1223395 (Clockwise)

Preceding gene: 110678585

Following gene: 110678588

Centisome position: 29.59

GC content: 55.95

Gene sequence:

>504_bases
ATGCTTGATACAATGACATTTACGAAAGCAGCCGGTGGCATTTGTGGTGCCTTGCTGGTGTTCCTTCTGGGCAAATGGGC
CGCAGAAGAACTCTACCACGTAGAGATGCATGGTGAAGCATCCTATGTGATCGAAGTCGAAAGCGGTGAAGACACCGCCG
AAGTGGAAGAAGTTGATTTCGCGACCATCATGGCGTCGGCAAGCGTGGAAGACGGCGCGAAGGTTTTCCGCAAGTGTTCA
GCCTGTCACAAGCTGGTTGAGGGCGAGAACGTCGCCGGACCATATCTTTACGGTGTGGTTGGGCGCGACAAGGCTGCGGC
AGAAGGCTATGGCTATTCGGATGCGCTCGCCTCCATGGAAGGTGCCTGGACGCCGGAAAACCTGAGCGGTTTCCTTGAAA
AACCATCTTCCTATGCGCCCGGTACCTCCATGGGGTTTGCAGGGCTGCGCAAGGTTGAGGATCGCGCCAATGTGATCGCC
TACCTCGACAGCCTCGACGACTGA

Upstream 100 bases:

>100_bases
CGTGCGAAAAAAGAGGCGTTTCGTCGCGGTAAGTACACCTTGCCACGGCCAAGGTGAAGACGTAGATAGCGCGTCAAGAA
GTTAGTGATGGAACCTACCC

Downstream 100 bases:

>100_bases
TCGAAAAGACACACCAATTGATCAAGCCGCGTGCATCTCTGCCCGCGGCTTTTTTATTCTTTGCCGGGTATGTTGGCGGC
TACAATCACATTTTCGCAAC

Product: cytochrome c552

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MLDTMTFTKAAGGICGALLVFLLGKWAAEELYHVEMHGEASYVIEVESGEDTAEVEEVDFATIMASASVEDGAKVFRKCS
ACHKLVEGENVAGPYLYGVVGRDKAAAEGYGYSDALASMEGAWTPENLSGFLEKPSSYAPGTSMGFAGLRKVEDRANVIA
YLDSLDD

Sequences:

>Translated_167_residues
MLDTMTFTKAAGGICGALLVFLLGKWAAEELYHVEMHGEASYVIEVESGEDTAEVEEVDFATIMASASVEDGAKVFRKCS
ACHKLVEGENVAGPYLYGVVGRDKAAAEGYGYSDALASMEGAWTPENLSGFLEKPSSYAPGTSMGFAGLRKVEDRANVIA
YLDSLDD
>Mature_167_residues
MLDTMTFTKAAGGICGALLVFLLGKWAAEELYHVEMHGEASYVIEVESGEDTAEVEEVDFATIMASASVEDGAKVFRKCS
ACHKLVEGENVAGPYLYGVVGRDKAAAEGYGYSDALASMEGAWTPENLSGFLEKPSSYAPGTSMGFAGLRKVEDRANVIA
YLDSLDD

Specific function: Mediates the electron transport between the cytochrome bc1 complex and cytochrome-c oxidase [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI11128019, Length=98, Percent_Identity=42.8571428571429, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17539604, Length=95, Percent_Identity=40, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17566554, Length=95, Percent_Identity=36.8421052631579, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320796, Length=104, Percent_Identity=38.4615384615385, Blast_Score=86, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322508, Length=103, Percent_Identity=39.8058252427184, Blast_Score=85, Evalue=7e-18,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=47.5728155339806, Blast_Score=93, Evalue=9e-20,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=39.8058252427184, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 17782; Mature: 17782

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDTMTFTKAAGGICGALLVFLLGKWAAEELYHVEMHGEASYVIEVESGEDTAEVEEVDF
CCCCCCHHHHHCHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEEEECCCCCHHHHHHHH
ATIMASASVEDGAKVFRKCSACHKLVEGENVAGPYLYGVVGRDKAAAEGYGYSDALASME
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCCHHHHHHHCC
GAWTPENLSGFLEKPSSYAPGTSMGFAGLRKVEDRANVIAYLDSLDD
CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLDTMTFTKAAGGICGALLVFLLGKWAAEELYHVEMHGEASYVIEVESGEDTAEVEEVDF
CCCCCCHHHHHCHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEEEECCCCCHHHHHHHH
ATIMASASVEDGAKVFRKCSACHKLVEGENVAGPYLYGVVGRDKAAAEGYGYSDALASME
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCCHHHHHHHCC
GAWTPENLSGFLEKPSSYAPGTSMGFAGLRKVEDRANVIAYLDSLDD
CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7628479 [H]