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The map label for this gene is cspA [C]

Identifier: 110678556

GI number: 110678556

Start: 1196296

End: 1196502

Strand: Reverse

Name: cspA [C]

Synonym: RD1_1229

Alternate gene names: 110678556

Gene position: 1196502-1196296 (Counterclockwise)

Preceding gene: 110678557

Following gene: 110678554

Centisome position: 28.95

GC content: 55.07

Gene sequence:

>207_bases
ATGGCTTCAGGCACCGTGAAATGGTTCAACACCACAAAAGGCTACGGCTTCATCGCGCCAGACTCTGGCGGCAAGGACAT
TTTTGTCCATATTTCCGCGGTTGAGCGGGCAGGTCTGACCGGGCTGGCCGACAACCAGAAAGTCACGTTTGAAATCGAAA
CAAGCCGCGATGGCCGCGAAAGCGCCAGCGATCTTGCAATTGCGTAA

Upstream 100 bases:

>100_bases
GCTGCTTTCGGCCCGCCTGAAACGACACTGTTTATCAATTGATTTAAGCCGAACCGCGCTGCCGCATCCTGCGGGCAGGT
TTTCTTTAGGAGACACGGAT

Downstream 100 bases:

>100_bases
AACAGGCTTTTAGCGGGTCATTCGGGCGCTTTCCGGCGCCCGTTTTCTTTTGTAGCGGGGCCTATCGCGATCCGGCTTGT
GCCACCAGTTCCGCCACATC

Product: cold shock protein CspA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MASGTVKWFNTTKGYGFIAPDSGGKDIFVHISAVERAGLTGLADNQKVTFEIETSRDGRESASDLAIA

Sequences:

>Translated_68_residues
MASGTVKWFNTTKGYGFIAPDSGGKDIFVHISAVERAGLTGLADNQKVTFEIETSRDGRESASDLAIA
>Mature_67_residues
ASGTVKWFNTTKGYGFIAPDSGGKDIFVHISAVERAGLTGLADNQKVTFEIETSRDGRESASDLAIA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=48.4375, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=49.1803278688525, Blast_Score=69, Evalue=6e-14,
Organism=Escherichia coli, GI1789979, Length=56, Percent_Identity=53.5714285714286, Blast_Score=69, Evalue=6e-14,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=48.4375, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=49.1803278688525, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=44.6153846153846, Blast_Score=65, Evalue=8e-13,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=43.5483870967742, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7207; Mature: 7076

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGTVKWFNTTKGYGFIAPDSGGKDIFVHISAVERAGLTGLADNQKVTFEIETSRDGRE
CCCCEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCC
SASDLAIA
CCCCEECC
>Mature Secondary Structure 
ASGTVKWFNTTKGYGFIAPDSGGKDIFVHISAVERAGLTGLADNQKVTFEIETSRDGRE
CCCEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCC
SASDLAIA
CCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]