Click here to switch to the map view.

The map label for this gene is 110678478

Identifier: 110678478

GI number: 110678478

Start: 1107704

End: 1108630

Strand: Reverse

Name: 110678478

Synonym: RD1_1145

Alternate gene names: NA

Gene position: 1108630-1107704 (Counterclockwise)

Preceding gene: 110678479

Following gene: 110678474

Centisome position: 26.82

GC content: 44.98

Gene sequence:

>927_bases
ATGATCTGCGCGTCGCTGTACTTCGATTTCTTCATCAGAATCTCCTCTTCCATCTTCGAGAAAATTCTACTTCCGCAGAC
CCCTAAATTTCGGGGGGATTACCGTTTCGATGAGGGTGACAGGTCAGAAATCGGTGTGCCCCAAGGTTTGAGCATTTCAA
ACATTTTATCAATGCTTTACCTAGAAGGTTTTGACCACTATTTCGCGCAAAAGTATCGGTATTTTAGGTATGTCGATGAT
ATTCTTTTAGTGGTGGGAGAGGAGCAAGCGGTCGGAATTCATGATGAGATAGCACGTCATATGAGAACAGAACTTCGCCT
TAAGACGCACGATCTGGACCCCAACCAGCCAGACAAGACAGCTATCACTCCCGTGAAAATTGGTACTGAATATCTAGGTT
ATCATATTTCAAGTGACGGACTTCGGATCAGGGAACGATCCTACAAGAAGATGTTTCGTGCCATTGTCGGATGCCTTAGA
GCATTGAAAGGCACTGCCCGAGTTGAGCAAGTACTTTGGCGCTTGAACTTGATTATCACGGGATGCCGCGTCGAAGAAAG
ATCGGTGGGATGGGTTTTCTTCTTTAGGCAATCGACAGACGTAGGGCAATTTCACAGGATGGATGCCTTTGTGCGAAAGC
AACTAACGCTGTATGGTCTAAAAGATCAAATTTCGATCGTTAAACGCTTTGCTAAAGCCTATCATGAGACAAGGTTCAAC
CGGGATAATACGAATTATATACCAGACTTTGACAACTTCAGCCTCGCTGACATGATGAAGGCAATTCACCTAGTGAAAGG
TATATCACTAGAGAAGCTGGGATCAATGGATCGCTCTGATGTGGAAGAGTTATATTGGAAGATGGTCAAGCGCGAAGTGG
CGAAGCTCGAAAGAGAAACGGTGGACTTCCTCACTTATGGATCATGA

Upstream 100 bases:

>100_bases
ATATTTTGAACGCCACTTATAAAAGCTCGCGCTGCTCATCCCATGTTCGCGACACAGATCAGACACCGGCACGCCGTTCT
CCGCCTGCTTCAAGATCGCC

Downstream 100 bases:

>100_bases
TGAGCCATAGTGAGTGGCTGGTGCGCAAGTCATGACTTGTGGCCCAAACGTCAAATCCCAACAAAATTATGCCGCGGAAG
AGGCGCACAAATCTGGTATG

Product: hypothetical protein

Products: NA

Alternate protein names: Prophage; Reverse Transcriptase Family Protein; Retron-Type Reverse Transcriptase; Reverse Transcriptase Domain Protein; RNA-Directed DNA Polymerase Protein

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MICASLYFDFFIRISSSIFEKILLPQTPKFRGDYRFDEGDRSEIGVPQGLSISNILSMLYLEGFDHYFAQKYRYFRYVDD
ILLVVGEEQAVGIHDEIARHMRTELRLKTHDLDPNQPDKTAITPVKIGTEYLGYHISSDGLRIRERSYKKMFRAIVGCLR
ALKGTARVEQVLWRLNLIITGCRVEERSVGWVFFFRQSTDVGQFHRMDAFVRKQLTLYGLKDQISIVKRFAKAYHETRFN
RDNTNYIPDFDNFSLADMMKAIHLVKGISLEKLGSMDRSDVEELYWKMVKREVAKLERETVDFLTYGS

Sequences:

>Translated_308_residues
MICASLYFDFFIRISSSIFEKILLPQTPKFRGDYRFDEGDRSEIGVPQGLSISNILSMLYLEGFDHYFAQKYRYFRYVDD
ILLVVGEEQAVGIHDEIARHMRTELRLKTHDLDPNQPDKTAITPVKIGTEYLGYHISSDGLRIRERSYKKMFRAIVGCLR
ALKGTARVEQVLWRLNLIITGCRVEERSVGWVFFFRQSTDVGQFHRMDAFVRKQLTLYGLKDQISIVKRFAKAYHETRFN
RDNTNYIPDFDNFSLADMMKAIHLVKGISLEKLGSMDRSDVEELYWKMVKREVAKLERETVDFLTYGS
>Mature_308_residues
MICASLYFDFFIRISSSIFEKILLPQTPKFRGDYRFDEGDRSEIGVPQGLSISNILSMLYLEGFDHYFAQKYRYFRYVDD
ILLVVGEEQAVGIHDEIARHMRTELRLKTHDLDPNQPDKTAITPVKIGTEYLGYHISSDGLRIRERSYKKMFRAIVGCLR
ALKGTARVEQVLWRLNLIITGCRVEERSVGWVFFFRQSTDVGQFHRMDAFVRKQLTLYGLKDQISIVKRFAKAYHETRFN
RDNTNYIPDFDNFSLADMMKAIHLVKGISLEKLGSMDRSDVEELYWKMVKREVAKLERETVDFLTYGS

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36098; Mature: 36098

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICASLYFDFFIRISSSIFEKILLPQTPKFRGDYRFDEGDRSEIGVPQGLSISNILSMLY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LEGFDHYFAQKYRYFRYVDDILLVVGEEQAVGIHDEIARHMRTELRLKTHDLDPNQPDKT
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCC
AITPVKIGTEYLGYHISSDGLRIRERSYKKMFRAIVGCLRALKGTARVEQVLWRLNLIIT
CCCCHHHCHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCRVEERSVGWVFFFRQSTDVGQFHRMDAFVRKQLTLYGLKDQISIVKRFAKAYHETRFN
CCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
RDNTNYIPDFDNFSLADMMKAIHLVKGISLEKLGSMDRSDVEELYWKMVKREVAKLERET
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
VDFLTYGS
HHHHCCCC
>Mature Secondary Structure
MICASLYFDFFIRISSSIFEKILLPQTPKFRGDYRFDEGDRSEIGVPQGLSISNILSMLY
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LEGFDHYFAQKYRYFRYVDDILLVVGEEQAVGIHDEIARHMRTELRLKTHDLDPNQPDKT
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCC
AITPVKIGTEYLGYHISSDGLRIRERSYKKMFRAIVGCLRALKGTARVEQVLWRLNLIIT
CCCCHHHCHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GCRVEERSVGWVFFFRQSTDVGQFHRMDAFVRKQLTLYGLKDQISIVKRFAKAYHETRFN
CCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
RDNTNYIPDFDNFSLADMMKAIHLVKGISLEKLGSMDRSDVEELYWKMVKREVAKLERET
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
VDFLTYGS
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA