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The map label for this gene is yeeY [H]

Identifier: 110678469

GI number: 110678469

Start: 1096623

End: 1097513

Strand: Direct

Name: yeeY [H]

Synonym: RD1_1134

Alternate gene names: 110678469

Gene position: 1096623-1097513 (Clockwise)

Preceding gene: 110678463

Following gene: 110678471

Centisome position: 26.53

GC content: 59.93

Gene sequence:

>891_bases
ATGACATTGGACCAACTCTTGACTCTCGATGCGATCGTGGCGTCGGGCACGTTCCGCGCTGCGGCGGAGCGCCTGAACAA
GGCGCAATCCGCTGTGAGCCACCAGATCAAGAAGCTGGAAGAGGAAGTGGGCTTTCTCCTCCTGTCCCGCGACTCTTATC
GCCCGCAGCTCACATCGGAGGGCGAAGTCTTTTTTCGTGAGGCAACGCGCGTTCTCGAACACGTCAATTGGCTCAAGGAA
GTGGCCGCCGGGCTGCGAAGTGATCAAGAACCGATAATCTCCATCGCGATCAGCGCCACCATGTCGCTTGATCCGATCCT
GGACGTTCTGAAGGAGGTTGGGCGCAGGTTCCCAAGCACACAAATCAAGGTCGCCAGCGAAATGATGGGCGGACCATTGG
AGCGATTGATCAGCGGCGAGGCCGATCTGATCATCGCCAGCCTTGCCGATGTCCCCATTGGGGAGGTGGAGACCCTCGCC
GTCGGTACAATAACCATACGTCCTGTCGCCAGCCCGGATTTTCCCGCGGCAGAGCGTTCCGGAGTCCGCTCAAGACGCGA
AATGCAAGCCTACACCCAAGTCGTCGTGTCCGGCACCGGTGGCCGCAACTTTGATCAAAGCCGCGATCTTCTGTCCGGTG
GTCAGCGGTGGACGGTTTCGGACTTTCAGGCGAAGAAATCGATTATCAAGGCCGGACTGGGCTGGGGCGGTATCCCCGAG
CATCTGATGGAGGACGATTTGGCGACCGGTGCTCTGGTGCCCCTTAACGTCGAGGGATTTCCCCCGCGCCACACCGAGAT
TTTTGCGATCCGACGACGGGACCGGCCGATCGGACAGGTTATGGCCGCGATCTGGGCGGGTTTGGGCGCGGACATTCCCG
AAAAAGCCTGA

Upstream 100 bases:

>100_bases
CTCCATGTTCGTTGTGCCCGACAGGTAGCAACGATGCACACCGATTGATAATATCGAGTTTTCATTTATATGATCTAGAA
ATACGATCATATGAGGCCCC

Downstream 100 bases:

>100_bases
AGGCGTTGCTCGGCCGTACCGCGTCGCGCTGCCGGGCCCGTTGTTCAAGGTTGTAGCAATGGTGATATCATAGGTCGTCA
AGCGCAACGCAGCCTATGTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTLDQLLTLDAIVASGTFRAAAERLNKAQSAVSHQIKKLEEEVGFLLLSRDSYRPQLTSEGEVFFREATRVLEHVNWLKE
VAAGLRSDQEPIISIAISATMSLDPILDVLKEVGRRFPSTQIKVASEMMGGPLERLISGEADLIIASLADVPIGEVETLA
VGTITIRPVASPDFPAAERSGVRSRREMQAYTQVVVSGTGGRNFDQSRDLLSGGQRWTVSDFQAKKSIIKAGLGWGGIPE
HLMEDDLATGALVPLNVEGFPPRHTEIFAIRRRDRPIGQVMAAIWAGLGADIPEKA

Sequences:

>Translated_296_residues
MTLDQLLTLDAIVASGTFRAAAERLNKAQSAVSHQIKKLEEEVGFLLLSRDSYRPQLTSEGEVFFREATRVLEHVNWLKE
VAAGLRSDQEPIISIAISATMSLDPILDVLKEVGRRFPSTQIKVASEMMGGPLERLISGEADLIIASLADVPIGEVETLA
VGTITIRPVASPDFPAAERSGVRSRREMQAYTQVVVSGTGGRNFDQSRDLLSGGQRWTVSDFQAKKSIIKAGLGWGGIPE
HLMEDDLATGALVPLNVEGFPPRHTEIFAIRRRDRPIGQVMAAIWAGLGADIPEKA
>Mature_295_residues
TLDQLLTLDAIVASGTFRAAAERLNKAQSAVSHQIKKLEEEVGFLLLSRDSYRPQLTSEGEVFFREATRVLEHVNWLKEV
AAGLRSDQEPIISIAISATMSLDPILDVLKEVGRRFPSTQIKVASEMMGGPLERLISGEADLIIASLADVPIGEVETLAV
GTITIRPVASPDFPAAERSGVRSRREMQAYTQVVVSGTGGRNFDQSRDLLSGGQRWTVSDFQAKKSIIKAGLGWGGIPEH
LMEDDLATGALVPLNVEGFPPRHTEIFAIRRRDRPIGQVMAAIWAGLGADIPEKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=256, Percent_Identity=28.125, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789492, Length=256, Percent_Identity=30.078125, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786508, Length=291, Percent_Identity=25.7731958762887, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787949, Length=258, Percent_Identity=24.8062015503876, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790262, Length=181, Percent_Identity=27.6243093922652, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786713, Length=256, Percent_Identity=23.828125, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=25.2559726962457, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32178; Mature: 32047

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDQLLTLDAIVASGTFRAAAERLNKAQSAVSHQIKKLEEEVGFLLLSRDSYRPQLTSE
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCC
GEVFFREATRVLEHVNWLKEVAAGLRSDQEPIISIAISATMSLDPILDVLKEVGRRFPST
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHCCCH
QIKVASEMMGGPLERLISGEADLIIASLADVPIGEVETLAVGTITIRPVASPDFPAAERS
HHHHHHHHHCCHHHHHHCCCHHEEEEHHCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHH
GVRSRREMQAYTQVVVSGTGGRNFDQSRDLLSGGQRWTVSDFQAKKSIIKAGLGWGGIPE
HHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCHH
HLMEDDLATGALVPLNVEGFPPRHTEIFAIRRRDRPIGQVMAAIWAGLGADIPEKA
HHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TLDQLLTLDAIVASGTFRAAAERLNKAQSAVSHQIKKLEEEVGFLLLSRDSYRPQLTSE
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCC
GEVFFREATRVLEHVNWLKEVAAGLRSDQEPIISIAISATMSLDPILDVLKEVGRRFPST
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHCCCH
QIKVASEMMGGPLERLISGEADLIIASLADVPIGEVETLAVGTITIRPVASPDFPAAERS
HHHHHHHHHCCHHHHHHCCCHHEEEEHHCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHH
GVRSRREMQAYTQVVVSGTGGRNFDQSRDLLSGGQRWTVSDFQAKKSIIKAGLGWGGIPE
HHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCHH
HLMEDDLATGALVPLNVEGFPPRHTEIFAIRRRDRPIGQVMAAIWAGLGADIPEKA
HHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]