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The map label for this gene is ylbA [H]

Identifier: 110678463

GI number: 110678463

Start: 1092548

End: 1093390

Strand: Direct

Name: ylbA [H]

Synonym: RD1_1128

Alternate gene names: 110678463

Gene position: 1092548-1093390 (Clockwise)

Preceding gene: 110678462

Following gene: 110678469

Centisome position: 26.43

GC content: 59.55

Gene sequence:

>843_bases
ATGTCCGCGCAGTATTTCGCCCCCAAAGGAGGACACCCGGATCAGAGAACCCTGCTGACGGATCGTGCGATTTTCACACC
GGCCTATGCTGTGATCCCCAAGGGGACGATGCGCGATATCGTGACGAGTTTTCTGCCCTTCTGGACGGGCACCCGTCTGT
GGGTTCTGGCGCGTCCGATGACCGGCTTTGCCGAGACGTTTTCCCACTACATCATGGAGATTTCGCCCGGTGGCGGGTCG
GACCGCACGGAAACCGACCCACAGGCGCAGGCCGTTCTTTTTGTTGTCGAGGGGCAGGCAACCCTGACGGTTGCCGGGCA
AACACATGTTCTAGAACCCGGCGGCTATGCCTATCTGCCCCCATCATGCAACTGGACAATGCACAACAAGGGATCGGACC
CGCTGGTGTTTCACTGGATCCGCAAAGCCTATGAGGCTGTGCCGGGTGTTGAGCAGCCCGACGTGATCATCACAAACGAA
CAGGAGATTGCGCCAACGGTGATGCCTGACACGGATGGGGCATGGGCCACGACGCGTTTCGTTGACCCGGGCGACATGCG
CCACGACATGCATGTCACCATAGTCAGTTTCAAGCCGGGCGGGGTGATCCCTTTTCTCGAAACCCATGTGATGGAGCATG
GGCTATATGTTCTGGAAGGCAAGGCCGCCTACCGGCTGAACAACGACTGGGTCGAGGTCGAAGCGGGCGATTACATGTGG
TTGCGCGCCTTTTGCCCGCAGGCGTGTTACGCGGGTGGCCCCGGTGATTTTCGGTATTTGCTGTATAAGGACGTGAACCG
GCACATGGGGCTGCGGCCTCTTCACCGCGACGGTGTTGCCTGA

Upstream 100 bases:

>100_bases
GCATTTTCAAATGAAGCCGAAAGGTGTTGTCGCGTTATTCGGTCTGGTTAGACAGTGAGCCCTTGCCGATACTGCGCTTG
CAAGCCTGAAAGGAGCCATC

Downstream 100 bases:

>100_bases
AGCCCGGTGCGAGAAACCTGACCGACTAATCATTGTCTGAGATGACGGATGTCAATGCGTCATGTGATTCAGGTTTTTCG
CATGACGCTTTAATGCTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSAQYFAPKGGHPDQRTLLTDRAIFTPAYAVIPKGTMRDIVTSFLPFWTGTRLWVLARPMTGFAETFSHYIMEISPGGGS
DRTETDPQAQAVLFVVEGQATLTVAGQTHVLEPGGYAYLPPSCNWTMHNKGSDPLVFHWIRKAYEAVPGVEQPDVIITNE
QEIAPTVMPDTDGAWATTRFVDPGDMRHDMHVTIVSFKPGGVIPFLETHVMEHGLYVLEGKAAYRLNNDWVEVEAGDYMW
LRAFCPQACYAGGPGDFRYLLYKDVNRHMGLRPLHRDGVA

Sequences:

>Translated_280_residues
MSAQYFAPKGGHPDQRTLLTDRAIFTPAYAVIPKGTMRDIVTSFLPFWTGTRLWVLARPMTGFAETFSHYIMEISPGGGS
DRTETDPQAQAVLFVVEGQATLTVAGQTHVLEPGGYAYLPPSCNWTMHNKGSDPLVFHWIRKAYEAVPGVEQPDVIITNE
QEIAPTVMPDTDGAWATTRFVDPGDMRHDMHVTIVSFKPGGVIPFLETHVMEHGLYVLEGKAAYRLNNDWVEVEAGDYMW
LRAFCPQACYAGGPGDFRYLLYKDVNRHMGLRPLHRDGVA
>Mature_279_residues
SAQYFAPKGGHPDQRTLLTDRAIFTPAYAVIPKGTMRDIVTSFLPFWTGTRLWVLARPMTGFAETFSHYIMEISPGGGSD
RTETDPQAQAVLFVVEGQATLTVAGQTHVLEPGGYAYLPPSCNWTMHNKGSDPLVFHWIRKAYEAVPGVEQPDVIITNEQ
EIAPTVMPDTDGAWATTRFVDPGDMRHDMHVTIVSFKPGGVIPFLETHVMEHGLYVLEGKAAYRLNNDWVEVEAGDYMWL
RAFCPQACYAGGPGDFRYLLYKDVNRHMGLRPLHRDGVA

Specific function: Unknown

COG id: COG3257

COG function: function code R; Uncharacterized protein, possibly involved in glyoxylate utilization

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786725, Length=257, Percent_Identity=31.1284046692607, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017627
- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR008579
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF05899 Cupin_3 [H]

EC number: NA

Molecular weight: Translated: 31218; Mature: 31087

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQYFAPKGGHPDQRTLLTDRAIFTPAYAVIPKGTMRDIVTSFLPFWTGTRLWVLARPM
CCCCCCCCCCCCCCHHEEEECCHHHCCCEEECCCCHHHHHHHHHHHHCCCCEEEEEECCC
TGFAETFSHYIMEISPGGGSDRTETDPQAQAVLFVVEGQATLTVAGQTHVLEPGGYAYLP
HHHHHHHHEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEECCCEEEECCCCEEEEC
PSCNWTMHNKGSDPLVFHWIRKAYEAVPGVEQPDVIITNEQEIAPTVMPDTDGAWATTRF
CCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEECCCCCCCEEEEEE
VDPGDMRHDMHVTIVSFKPGGVIPFLETHVMEHGLYVLEGKAAYRLNNDWVEVEAGDYMW
CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCEEEEECCEEEEECCCEEEEECCCEEE
LRAFCPQACYAGGPGDFRYLLYKDVNRHMGLRPLHRDGVA
EEHHCCHHHCCCCCCCEEEEEEEEHHHHCCCCCHHCCCCC
>Mature Secondary Structure 
SAQYFAPKGGHPDQRTLLTDRAIFTPAYAVIPKGTMRDIVTSFLPFWTGTRLWVLARPM
CCCCCCCCCCCCCHHEEEECCHHHCCCEEECCCCHHHHHHHHHHHHCCCCEEEEEECCC
TGFAETFSHYIMEISPGGGSDRTETDPQAQAVLFVVEGQATLTVAGQTHVLEPGGYAYLP
HHHHHHHHEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEECCCEEEECCCCEEEEC
PSCNWTMHNKGSDPLVFHWIRKAYEAVPGVEQPDVIITNEQEIAPTVMPDTDGAWATTRF
CCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEECCCCCCCEEEEEE
VDPGDMRHDMHVTIVSFKPGGVIPFLETHVMEHGLYVLEGKAAYRLNNDWVEVEAGDYMW
CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCEEEEECCEEEEECCCEEEEECCCEEE
LRAFCPQACYAGGPGDFRYLLYKDVNRHMGLRPLHRDGVA
EEHHCCHHHCCCCCCCEEEEEEEEHHHHCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10601204; 9278503 [H]