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The map label for this gene is pal [C]

Identifier: 110678461

GI number: 110678461

Start: 1091113

End: 1091778

Strand: Direct

Name: pal [C]

Synonym: RD1_1126

Alternate gene names: 110678461

Gene position: 1091113-1091778 (Clockwise)

Preceding gene: 110678457

Following gene: 110678462

Centisome position: 26.4

GC content: 57.96

Gene sequence:

>666_bases
GTGTTGTTCAGAATGCTCTTGGCGCTTTGCCTGTTCTTGCCTGTTTCACTGTCCGCACAAGATATCGGGACGATCAATTT
CGACTTTGACTCGGCTGAACTGGATGCCGAGGCGCAGGCCAAGATTGTCGAGATTGCCGAGCAGTTGAAGGAAAACCCTT
CGTATAAACCGACTGTACTCATTGGCTTTACGGATGCTGTTGGTGGTGTAGGCTATAATGATCAACTGGGCCTGCGCCGC
GCGAATGCGGTCTCAGCTGCCTTGTTGGAACAGGGGGTCAGCGTCGACCGGATCGGTACGGTCTCAAGCCGTGGCGAGCG
TGAGTTGCTTGTGAGTGTCGCGGGGCCTGAACGGTTGAACCGGCGTGTCACCGTGACCTTGGGCGAGATGCTGGCGGCCT
GCCGAACGTACCGCGAAGTTCCGCTCACGGCGTCCTCTGTCGGCGATGAATTGCAAACGGACCTTGAATCGCGCCTGTCC
GAAGCGGAAAGTTTTTTTGCGCAACTTGCCGCCGCGCGCCGCAGCGGTGCCGCCTTTCAGATGGCCGGTGCTGCACGCGA
AGATTGCAACATTGCCGTCGGATATGATGCCTCTGCCCTGCGCAAGGTTGAATACGCGCAGCGTTGTTTTTGCAGTTCTG
CCCGGATGCGCGTCGCGCTGAACTGA

Upstream 100 bases:

>100_bases
GAATTGTACAGAAGTTGCCTCATTTTTGTTCTGTTCTTGTGCAGAGTGTGACAGTGCAGTATCACTTTTAACAACTGTAG
ATTAGCTGGTTGGATCCCAC

Downstream 100 bases:

>100_bases
TCTGACCACCCGTGCCGCGGGCGTGCGCAGTCTTTCCTTGAACCGGGCAGTGTTATTCCCCAGTCTGAACGGGCCTGCTT
ACGGGATACGTCGAAAGGGG

Product: OmpA family domain-containing protein

Products: NA

Alternate protein names: OmpA Family Protein; OmpA/MotB Domain-Containing Protein; OmpA/MotB Domain Protein; OmpA Family Domain-Containing Protein; Thrombospondin Type 3 RepeatOmpA/MotB

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MLFRMLLALCLFLPVSLSAQDIGTINFDFDSAELDAEAQAKIVEIAEQLKENPSYKPTVLIGFTDAVGGVGYNDQLGLRR
ANAVSAALLEQGVSVDRIGTVSSRGERELLVSVAGPERLNRRVTVTLGEMLAACRTYREVPLTASSVGDELQTDLESRLS
EAESFFAQLAAARRSGAAFQMAGAAREDCNIAVGYDASALRKVEYAQRCFCSSARMRVALN

Sequences:

>Translated_221_residues
MLFRMLLALCLFLPVSLSAQDIGTINFDFDSAELDAEAQAKIVEIAEQLKENPSYKPTVLIGFTDAVGGVGYNDQLGLRR
ANAVSAALLEQGVSVDRIGTVSSRGERELLVSVAGPERLNRRVTVTLGEMLAACRTYREVPLTASSVGDELQTDLESRLS
EAESFFAQLAAARRSGAAFQMAGAAREDCNIAVGYDASALRKVEYAQRCFCSSARMRVALN
>Mature_221_residues
MLFRMLLALCLFLPVSLSAQDIGTINFDFDSAELDAEAQAKIVEIAEQLKENPSYKPTVLIGFTDAVGGVGYNDQLGLRR
ANAVSAALLEQGVSVDRIGTVSSRGERELLVSVAGPERLNRRVTVTLGEMLAACRTYREVPLTASSVGDELQTDLESRLS
EAESFFAQLAAARRSGAAFQMAGAAREDCNIAVGYDASALRKVEYAQRCFCSSARMRVALN

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23835; Mature: 23835

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFRMLLALCLFLPVSLSAQDIGTINFDFDSAELDAEAQAKIVEIAEQLKENPSYKPTVL
CHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
IGFTDAVGGVGYNDQLGLRRANAVSAALLEQGVSVDRIGTVSSRGERELLVSVAGPERLN
EEECHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHC
RRVTVTLGEMLAACRTYREVPLTASSVGDELQTDLESRLSEAESFFAQLAAARRSGAAFQ
CEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
MAGAAREDCNIAVGYDASALRKVEYAQRCFCSSARMRVALN
ECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MLFRMLLALCLFLPVSLSAQDIGTINFDFDSAELDAEAQAKIVEIAEQLKENPSYKPTVL
CHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
IGFTDAVGGVGYNDQLGLRRANAVSAALLEQGVSVDRIGTVSSRGERELLVSVAGPERLN
EEECHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHC
RRVTVTLGEMLAACRTYREVPLTASSVGDELQTDLESRLSEAESFFAQLAAARRSGAAFQ
CEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
MAGAAREDCNIAVGYDASALRKVEYAQRCFCSSARMRVALN
ECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA