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The map label for this gene is rpe [H]

Identifier: 110678440

GI number: 110678440

Start: 1056551

End: 1057243

Strand: Reverse

Name: rpe [H]

Synonym: RD1_1105

Alternate gene names: 110678440

Gene position: 1057243-1056551 (Counterclockwise)

Preceding gene: 110678441

Following gene: 110678438

Centisome position: 25.58

GC content: 60.89

Gene sequence:

>693_bases
ATGGCACTCAACCGCTCATTCAAAATCGCGCCGTCGATCCTCTCTGCCGATTTCGCGAACTTTGGCGCGGAATGCGAAGC
CATAGAGGCGCAAGGCGCGGATTGGGTGCATGTGGATGTGATGGATGGGCATTTCGTACCCAACATCACCTTTGGCCCCT
CGACCTGCGCTGCGATCCGCCCGCATATCAAGACCGTCATGGACGTGCACCTGATGATCGCACCCGTCGATCCTTATATT
GATGCCTTTGCCAAGGCGGGAGCCGATGTCATCACCGCCCATGTCGAAGCGGGCCCGCATATCCACCGCACCATGCAGGC
CATCCGCGCAGCTGGCGCAAAGGCCGGCGTTGCGCTGAACCCCGGCACCCCTGCCTCTTCGGTCGAATATCTGCTGGATA
TGGTCGATCTGGTCTGTGTCATGACGGTAAACCCCGGTTTTGGCGGGCAGAAATTCATCCACAGTCAGGTTGAAAAGGTG
CGCCAACTGCGTGCGATGATCGGCGACAGGCCCATCCATATCGAAATCGACGGCGGTGTTGATCCCACCACCGCGCCCTT
GGTGGCGGCGGCGGGCGCGGATGTACTGGTCGCGGGATCGGCCGTCTTTCGCGGCGGGTCCGTCAGCAACCCCGCGCCTT
ACGGGGCGAACATCAAGGCCATACGCGACGCGGTTTTGTCGACAACCGTCTGA

Upstream 100 bases:

>100_bases
TAACCTGTGTCGTATAAAATTCATCGGCCACACCCTTGGACAAAGGGCGCCCGGACCGATATAGGCGGAATGATAAAACG
TCTCCCGAAAGGTTCGTCCA

Downstream 100 bases:

>100_bases
CACACCGCCCTGATCGCGATATCAGCGCCGGTAAATGAAACACCGCCCCTCGATGGCGTCTTGCGGCAGCGCGATCTGCG
TCAAGGTCTCAAAATACATC

Product: ribulose-5-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MALNRSFKIAPSILSADFANFGAECEAIEAQGADWVHVDVMDGHFVPNITFGPSTCAAIRPHIKTVMDVHLMIAPVDPYI
DAFAKAGADVITAHVEAGPHIHRTMQAIRAAGAKAGVALNPGTPASSVEYLLDMVDLVCVMTVNPGFGGQKFIHSQVEKV
RQLRAMIGDRPIHIEIDGGVDPTTAPLVAAAGADVLVAGSAVFRGGSVSNPAPYGANIKAIRDAVLSTTV

Sequences:

>Translated_230_residues
MALNRSFKIAPSILSADFANFGAECEAIEAQGADWVHVDVMDGHFVPNITFGPSTCAAIRPHIKTVMDVHLMIAPVDPYI
DAFAKAGADVITAHVEAGPHIHRTMQAIRAAGAKAGVALNPGTPASSVEYLLDMVDLVCVMTVNPGFGGQKFIHSQVEKV
RQLRAMIGDRPIHIEIDGGVDPTTAPLVAAAGADVLVAGSAVFRGGSVSNPAPYGANIKAIRDAVLSTTV
>Mature_229_residues
ALNRSFKIAPSILSADFANFGAECEAIEAQGADWVHVDVMDGHFVPNITFGPSTCAAIRPHIKTVMDVHLMIAPVDPYID
AFAKAGADVITAHVEAGPHIHRTMQAIRAAGAKAGVALNPGTPASSVEYLLDMVDLVCVMTVNPGFGGQKFIHSQVEKVR
QLRAMIGDRPIHIEIDGGVDPTTAPLVAAAGADVLVAGSAVFRGGSVSNPAPYGANIKAIRDAVLSTTV

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=202, Percent_Identity=45.049504950495, Blast_Score=167, Evalue=7e-42,
Organism=Homo sapiens, GI219879828, Length=202, Percent_Identity=43.0693069306931, Blast_Score=154, Evalue=6e-38,
Organism=Homo sapiens, GI24307923, Length=157, Percent_Identity=36.9426751592357, Blast_Score=92, Evalue=3e-19,
Organism=Escherichia coli, GI1789788, Length=202, Percent_Identity=49.009900990099, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=38.0710659898477, Blast_Score=143, Evalue=9e-36,
Organism=Escherichia coli, GI1790754, Length=195, Percent_Identity=33.8461538461538, Blast_Score=99, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=225, Percent_Identity=39.5555555555556, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6322341, Length=208, Percent_Identity=42.7884615384615, Blast_Score=167, Evalue=1e-42,
Organism=Drosophila melanogaster, GI24586301, Length=221, Percent_Identity=41.1764705882353, Blast_Score=165, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23971; Mature: 23840

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALNRSFKIAPSILSADFANFGAECEAIEAQGADWVHVDVMDGHFVPNITFGPSTCAAIR
CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
PHIKTVMDVHLMIAPVDPYIDAFAKAGADVITAHVEAGPHIHRTMQAIRAAGAKAGVALN
HHHHHHHHEEEEEECCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEC
PGTPASSVEYLLDMVDLVCVMTVNPGFGGQKFIHSQVEKVRQLRAMIGDRPIHIEIDGGV
CCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
DPTTAPLVAAAGADVLVAGSAVFRGGSVSNPAPYGANIKAIRDAVLSTTV
CCCCHHHHHHCCCCEEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
ALNRSFKIAPSILSADFANFGAECEAIEAQGADWVHVDVMDGHFVPNITFGPSTCAAIR
CCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
PHIKTVMDVHLMIAPVDPYIDAFAKAGADVITAHVEAGPHIHRTMQAIRAAGAKAGVALN
HHHHHHHHEEEEEECCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEC
PGTPASSVEYLLDMVDLVCVMTVNPGFGGQKFIHSQVEKVRQLRAMIGDRPIHIEIDGGV
CCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
DPTTAPLVAAAGADVLVAGSAVFRGGSVSNPAPYGANIKAIRDAVLSTTV
CCCCHHHHHHCCCCEEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA