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The map label for this gene is 110678408

Identifier: 110678408

GI number: 110678408

Start: 1028294

End: 1028773

Strand: Direct

Name: 110678408

Synonym: RD1_1069

Alternate gene names: NA

Gene position: 1028294-1028773 (Clockwise)

Preceding gene: 110678407

Following gene: 110678409

Centisome position: 24.88

GC content: 58.54

Gene sequence:

>480_bases
ATGTCCCGCATCTCGCATATCACCCTTGATGACAGCGGCCTGCCGCCGCCCACGCCAGAAATCGAACAAGAGCGCAAAGT
CGCGATGTTCGACCTGCTGGAGGACAATACCTTTGTGCTGCCCCCGCGTGAGGGTCGCCCGGTGCCGGAAGGCCCCTACC
ACGTAAGTCTCGCGATCCGTGACAAACGACTGGTTTTTGATGTGAACACCGAAACCGCGGAAAAAGCGGCTGAATTCCAC
CTCTCGCTCGGACCGTTCCGGCAGGTCGTCAAGGACTACTTCCAGATTTGCGAAAGCTATTTTGACGCGGTCAAGAAACT
GCCGCCCAGCCAGATTGAAACCATCGACATGGCGCGGCGCGGGATTCACAATGAAGGCAGCCGCGTGTTGCAAGAACGCC
TCGAAGGCAAGGCCGACATCGACATCGACACTGCGCGGCGGCTGTTCACCCTGATCTGCGTTCTGCATTTTGGCGGCTAG

Upstream 100 bases:

>100_bases
GCGCAAACTAAACGATACGCAGATGCCCTAAAAGGTTGCCCCGTGCGGGGTTTCCGGGCTACTCAGGCGCGGCTAAGTTC
CATCGGCAAGAAGTATTCCT

Downstream 100 bases:

>100_bases
ATGACACAGGATGCGCCACAGTCCGTTCTGTTTTGTTGCGATCATAATGCCGTGCGCTCTCCGATGGCCGAAGGCATCAT
GAAAAAGCTCTATGGCACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSRISHITLDDSGLPPPTPEIEQERKVAMFDLLEDNTFVLPPREGRPVPEGPYHVSLAIRDKRLVFDVNTETAEKAAEFH
LSLGPFRQVVKDYFQICESYFDAVKKLPPSQIETIDMARRGIHNEGSRVLQERLEGKADIDIDTARRLFTLICVLHFGG

Sequences:

>Translated_159_residues
MSRISHITLDDSGLPPPTPEIEQERKVAMFDLLEDNTFVLPPREGRPVPEGPYHVSLAIRDKRLVFDVNTETAEKAAEFH
LSLGPFRQVVKDYFQICESYFDAVKKLPPSQIETIDMARRGIHNEGSRVLQERLEGKADIDIDTARRLFTLICVLHFGG
>Mature_158_residues
SRISHITLDDSGLPPPTPEIEQERKVAMFDLLEDNTFVLPPREGRPVPEGPYHVSLAIRDKRLVFDVNTETAEKAAEFHL
SLGPFRQVVKDYFQICESYFDAVKKLPPSQIETIDMARRGIHNEGSRVLQERLEGKADIDIDTARRLFTLICVLHFGG

Specific function: Unknown

COG id: COG5328

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0262 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1069_ROSDO (Q16BB4)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681415.1
- STRING:   Q16BB4
- GeneID:   4198311
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1069
- NMPDR:   fig|375451.6.peg.999
- eggNOG:   COG5328
- HOGENOM:   HBG294171
- OMA:   IDMARRG
- ProtClustDB:   PRK02853
- BioCyc:   RDEN375451:RD1_1069-MONOMER
- HAMAP:   MF_00678
- InterPro:   IPR008321
- PIRSF:   PIRSF032146

Pfam domain/function: PF06793 UPF0262

EC number: NA

Molecular weight: Translated: 18074; Mature: 17943

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRISHITLDDSGLPPPTPEIEQERKVAMFDLLEDNTFVLPPREGRPVPEGPYHVSLAIR
CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEE
DKRLVFDVNTETAEKAAEFHLSLGPFRQVVKDYFQICESYFDAVKKLPPSQIETIDMARR
CCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GIHNEGSRVLQERLEGKADIDIDTARRLFTLICVLHFGG
CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRISHITLDDSGLPPPTPEIEQERKVAMFDLLEDNTFVLPPREGRPVPEGPYHVSLAIR
CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEEEE
DKRLVFDVNTETAEKAAEFHLSLGPFRQVVKDYFQICESYFDAVKKLPPSQIETIDMARR
CCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
GIHNEGSRVLQERLEGKADIDIDTARRLFTLICVLHFGG
CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA