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The map label for this gene is 110678381

Identifier: 110678381

GI number: 110678381

Start: 1002966

End: 1003664

Strand: Direct

Name: 110678381

Synonym: RD1_1038

Alternate gene names: NA

Gene position: 1002966-1003664 (Clockwise)

Preceding gene: 110678380

Following gene: 110678382

Centisome position: 24.27

GC content: 61.8

Gene sequence:

>699_bases
ATGACAGTGCCGTATGAAACCGCCAAAGCCGCCCTTTTGGAAGCAGCCATGATGCATGTGCCGTTTGATGGCTGGTCAGA
GACCACATTTCAGGCCGCCGCGCGGGATGCGGAGTTGTCGCCATCGGTCGCGCGGGCCATCTGTCCGCGCGGTGCGGTTG
ATCTGGCGATTGCCTTTCACAAGGCGGGGGATGCGGCGATGCTGGACCGTCTGGCCGAGACTGACCTCAGCGCGATGAAG
TTCCGCGACAAGGTGACAGCGGCGGTGCGCATACGTCTTGAAGTGATTGAAGACAAGGAAGCGGTGCGCCGGGGCACCAC
GCTCTTTGCGCTGCCGATGTATGCGGCGGATGGGGCCAAGCTGATCTGGGGCACGTGCGATGCGATCTGGACGACGCTGG
GCGATACGTCTGACGATGTGAACTGGTACACGAAGCGTGCCACCCTGTCGGGCGTCTATTCGTCTACGGTGCTTTATTGG
CTGGGCGATGACAGCCCTGATCACATGGCCACATGGGGCTTTCTGGACCGGCGGATCGAAAACGTCATGGCCATTGAGCA
GGTCAAGGCCAAGGTGCGCCAAAGCCCGACGCTGAGCCGTTTGATGACAGGTCCGAATTGGCTGTTGAGCCAGATCAAGG
CGCCGCGCATCACGCCCAAAACCGACCTGCCGGGAAGCTGGACCGCCCCGCGCGAGTGA

Upstream 100 bases:

>100_bases
CCTTTCTAAGTTGAGTTGCAAGGATTTGCAGGAAGTGGGCGTATAGCAAAGACGCCCTAACTTGTCTAGTGTGTTGATAC
CGACGTTCAGGAGCCAGATG

Downstream 100 bases:

>100_bases
TGGCGTTGCACCCGTCGTGTGCTTGTCTATTGTGAGCACAAACTGAACAACAGGACGGATGACATGGCCCAGATGATGCG
CGCAATTGAGATCAGCGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: RpsU-Divergently Transcribed; COQ9 Family Ubiquinone Biosynthesis Protein; Ubiquinone Biosynthesis Protein; TetR Family Transcriptional Regulator; Rpsu-Divergently Transcribed Protein; Isoleucyl-TRNA Synthetase

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTVPYETAKAALLEAAMMHVPFDGWSETTFQAAARDAELSPSVARAICPRGAVDLAIAFHKAGDAAMLDRLAETDLSAMK
FRDKVTAAVRIRLEVIEDKEAVRRGTTLFALPMYAADGAKLIWGTCDAIWTTLGDTSDDVNWYTKRATLSGVYSSTVLYW
LGDDSPDHMATWGFLDRRIENVMAIEQVKAKVRQSPTLSRLMTGPNWLLSQIKAPRITPKTDLPGSWTAPRE

Sequences:

>Translated_232_residues
MTVPYETAKAALLEAAMMHVPFDGWSETTFQAAARDAELSPSVARAICPRGAVDLAIAFHKAGDAAMLDRLAETDLSAMK
FRDKVTAAVRIRLEVIEDKEAVRRGTTLFALPMYAADGAKLIWGTCDAIWTTLGDTSDDVNWYTKRATLSGVYSSTVLYW
LGDDSPDHMATWGFLDRRIENVMAIEQVKAKVRQSPTLSRLMTGPNWLLSQIKAPRITPKTDLPGSWTAPRE
>Mature_231_residues
TVPYETAKAALLEAAMMHVPFDGWSETTFQAAARDAELSPSVARAICPRGAVDLAIAFHKAGDAAMLDRLAETDLSAMKF
RDKVTAAVRIRLEVIEDKEAVRRGTTLFALPMYAADGAKLIWGTCDAIWTTLGDTSDDVNWYTKRATLSGVYSSTVLYWL
GDDSPDHMATWGFLDRRIENVMAIEQVKAKVRQSPTLSRLMTGPNWLLSQIKAPRITPKTDLPGSWTAPRE

Specific function: Unknown

COG id: COG5590

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI40789233, Length=194, Percent_Identity=27.8350515463918, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24586344, Length=185, Percent_Identity=33.5135135135135, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25608; Mature: 25476

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVPYETAKAALLEAAMMHVPFDGWSETTFQAAARDAELSPSVARAICPRGAVDLAIAFH
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEE
KAGDAAMLDRLAETDLSAMKFRDKVTAAVRIRLEVIEDKEAVRRGTTLFALPMYAADGAK
CCCCHHHHHHHHHCCHHHHHHHHHHHEEHEEEEEECCCHHHHHCCCEEEEEEEECCCCCE
LIWGTCDAIWTTLGDTSDDVNWYTKRATLSGVYSSTVLYWLGDDSPDHMATWGFLDRRIE
EEEEHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHH
NVMAIEQVKAKVRQSPTLSRLMTGPNWLLSQIKAPRITPKTDLPGSWTAPRE
HHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TVPYETAKAALLEAAMMHVPFDGWSETTFQAAARDAELSPSVARAICPRGAVDLAIAFH
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEE
KAGDAAMLDRLAETDLSAMKFRDKVTAAVRIRLEVIEDKEAVRRGTTLFALPMYAADGAK
CCCCHHHHHHHHHCCHHHHHHHHHHHEEHEEEEEECCCHHHHHCCCEEEEEEEECCCCCE
LIWGTCDAIWTTLGDTSDDVNWYTKRATLSGVYSSTVLYWLGDDSPDHMATWGFLDRRIE
EEEEHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHH
NVMAIEQVKAKVRQSPTLSRLMTGPNWLLSQIKAPRITPKTDLPGSWTAPRE
HHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA