| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678367
Identifier: 110678367
GI number: 110678367
Start: 990208
End: 992115
Strand: Direct
Name: 110678367
Synonym: RD1_1024
Alternate gene names: NA
Gene position: 990208-992115 (Clockwise)
Preceding gene: 110678366
Following gene: 110678368
Centisome position: 23.96
GC content: 60.43
Gene sequence:
>1908_bases ATGCGCATGCGGTTGATGGTGATGGTCATGGCAGCCCTGTCTTTCTGGGCCTCTGCGCTTGCGGCTCAACCCTTGCTGAT GGAGGGCACCAATACGGTGTTTCAGCGCGTGCTGACCCGCCCCGCCGCCACCCTGCACAGTGCCGTTGATGGCGCCGTGA TCGAACATATCCCCGCGTTTCAGCCGTTTTACGTCTTTGCCGATCAGGGCGCATGGAAACAGATCGGACCGTCCATTTCG AGGGAGCCGACCGGATGGGTGAAAACGGACCAGACCGTTGAGTGGAAACAGAATATCGTCGGTGCCTTTACGAATGCCGC CGGGCGGGAGCGCCAGCTGGTGTTTCAGAGCGAAGAGGATTTGCGCTGGCTGTTGAACCACGAAGCCTTGCCGCAGGTGC AGGAGCGGTTGCTGGCCGAGGCCTCGGCGGGGATATCGCAGGGCAACAACGGTGTTGTCTCTGTTGAGCCGGAAGAGTTC GTCAACATCCGCGAAGACCTCTATGTGATGCCGATCCTCGATTTTGTCGAAGACCTGCATCCGCTCAACTACGAGGATAT TCTGTTGATGGAGGTGGCCTCTGTCCCGCTCAAGGCGGAGAGTGGCGTGCAAAACAACGCGGATCAGGGCAATGCGGCCT TTGACGTCGGGATCGTCTTTGTGTTCGACACCACCCAGTCGATGGAGACCTATATCGCGCGCACGCAGAAAGTCCTGCAA AACACGGTTCAGCAGATCGCAGGGACCGAGATTGGCAAGCTGGTGAACTTTGGCGCCATCGGGTTTCGCGACAACACGGA TGCGGTGCCCGAACTGGAATACCGCACCAAGGTCCTTGCGGATATCAAACGGCGCGATGACCAGTCCGAAGTGTTGAACG CGATTGCCAACACACGGGTGGCCATCGCCAATTCGCCCGGTTTCAACGAAGACAGTCTGGCGGGTGTCGAGGATGCGATT GACCTGATTGACTGGCAGCAAGAGGGATCGGGCGATCCGATTGATGCACGCTATATCATTCTGGTCACGGACGCCGGGCC GAAAGACCCGCGTGATCCCAATGCACGCTCGCAGATCGGGGTTGAGGAGTTGCAAGCCGATGCAGAGGGCAAGAACATCG TCACGATGACGCTGCACCTCAAAACGCCGACCGGGGGCGAGGCAAACCATGCCTATGCCGAAAGCCGCTACCGTGCGCTG TCGACCTTTGCGGGTCGTCAGTTCTATTTCCCCATCGAGGGCGGATCAGAGGAAGCGTTCGAGGGTGTCGCAACCCGGCT GGTCACGGCCATCACCGATCACGTGCGCACCGCGCGCGGCGAAACATCAATCCTGAGCGAGGACGAGGCCGGCGAAGATC TGGTGGCCTTGGGCCGCGCCATGCGCCTGGCCTATCTGGGCTCACAACGCGGCACGCAGGCCCCGGATGTGATCCGCGGG TGGGTCAGTGACAAGGCGGTGGAAGCGCCGCAATCGCTCGCTGTGGAGCCGCGCTTGCTGATCACCAAGAATGAGATGGC GACAATGGCGGAACTGCTGGACAACCTGATCCGTCTGGGGGAGCAAAGCCAGGGTGGCGATGATGCGATGAACTTCTTTA CGCAGGTGCGGGGCGTGATTGCGGATATGGCAACCAACCCGGACCGGCGGCTGAACACGCAAGCCGACACGCTGGGCGGG GCGTTGGAATACCTTGAGCAACTGCCCTATCGCAGCCAGCTTTTGCAAATGACCGAAGACCGCTGGGCGCAAAGTGCCAT GCTGCGCCGGTCCATCATCGACGGGATGCGCCAGAAGCTGACGCAATACCGCAAGTGGCTGTTTGACCCGCAGGTCTGGA CCGCGCTGCACGACGGGGCCGATGATGGGGAGCTGGTCTTTGCCATGCCCTTTGACGTTTTGCCCTGA
Upstream 100 bases:
>100_bases AGCGAAAAGCTGGCTGCCTTGTGCACACGGATGGCCGATATGACAGACACATTGGTGCAGGGCGCCGTCACCGATTATTG TGGCAATTAGGGAGATGGGT
Downstream 100 bases:
>100_bases GGCGCGGCGATGGCCTATTCGCTCGCAATTGACGATCTGACGGTGACGCTTGGCGATGCAGAACGCCGCTTTACGCTGCA AGCGGGGCAGTGGTCGATTG
Product: hypothetical protein
Products: NA
Alternate protein names: PpkA-Related Protein; Serine/Threonine Protein Kinase; Serine/Threonine Protein Kinase PpkA; Von Willebrand Factor Type A Domain-Containing Protein; Protein Kinase; Exported Protein
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAFQPFYVFADQGAWKQIGPSIS REPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEEDLRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEF VNIREDLYVMPILDFVEDLHPLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRVAIANSPGFNEDSLAGVEDAI DLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIGVEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRAL STFAGRQFYFPIEGGSEEAFEGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVIADMATNPDRRLNTQADTLGG ALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKLTQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP
Sequences:
>Translated_635_residues MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAFQPFYVFADQGAWKQIGPSIS REPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEEDLRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEF VNIREDLYVMPILDFVEDLHPLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRVAIANSPGFNEDSLAGVEDAI DLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIGVEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRAL STFAGRQFYFPIEGGSEEAFEGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVIADMATNPDRRLNTQADTLGG ALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKLTQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP >Mature_635_residues MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAFQPFYVFADQGAWKQIGPSIS REPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEEDLRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEF VNIREDLYVMPILDFVEDLHPLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRVAIANSPGFNEDSLAGVEDAI DLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIGVEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRAL STFAGRQFYFPIEGGSEEAFEGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVIADMATNPDRRLNTQADTLGG ALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKLTQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70221; Mature: 70221
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAF CCHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHCCCC QPFYVFADQGAWKQIGPSISREPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEED CCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHH LRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEFVNIREDLYVMPILDFVEDLH HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHEEHHHHHHHHHHHC PLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHH NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRV HHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEE AIANSPGFNEDSLAGVEDAIDLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIG EEECCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCC VEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRALSTFAGRQFYFPIEGGSEEAF HHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH EGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVI HHHHHHHCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH ADMATNPDRRLNTQADTLGGALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKL HHHCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP HHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCC >Mature Secondary Structure MRMRLMVMVMAALSFWASALAAQPLLMEGTNTVFQRVLTRPAATLHSAVDGAVIEHIPAF CCHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHCCCC QPFYVFADQGAWKQIGPSISREPTGWVKTDQTVEWKQNIVGAFTNAAGRERQLVFQSEED CCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHH LRWLLNHEALPQVQERLLAEASAGISQGNNGVVSVEPEEFVNIREDLYVMPILDFVEDLH HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHEEHHHHHHHHHHHC PLNYEDILLMEVASVPLKAESGVQNNADQGNAAFDVGIVFVFDTTQSMETYIARTQKVLQ CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHH NTVQQIAGTEIGKLVNFGAIGFRDNTDAVPELEYRTKVLADIKRRDDQSEVLNAIANTRV HHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEE AIANSPGFNEDSLAGVEDAIDLIDWQQEGSGDPIDARYIILVTDAGPKDPRDPNARSQIG EEECCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCC VEELQADAEGKNIVTMTLHLKTPTGGEANHAYAESRYRALSTFAGRQFYFPIEGGSEEAF HHHHHCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH EGVATRLVTAITDHVRTARGETSILSEDEAGEDLVALGRAMRLAYLGSQRGTQAPDVIRG HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH WVSDKAVEAPQSLAVEPRLLITKNEMATMAELLDNLIRLGEQSQGGDDAMNFFTQVRGVI HHHHHHHCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH ADMATNPDRRLNTQADTLGGALEYLEQLPYRSQLLQMTEDRWAQSAMLRRSIIDGMRQKL HHHCCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQYRKWLFDPQVWTALHDGADDGELVFAMPFDVLP HHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA