Click here to switch to the map view.

The map label for this gene is nodN [H]

Identifier: 110678349

GI number: 110678349

Start: 967826

End: 968275

Strand: Direct

Name: nodN [H]

Synonym: RD1_1005

Alternate gene names: 110678349

Gene position: 967826-968275 (Clockwise)

Preceding gene: 110678348

Following gene: 110678351

Centisome position: 23.42

GC content: 61.33

Gene sequence:

>450_bases
ATGATGCTGACACGCGAGACTCTACCGCAGGCTGTCGGCAAGCCCTTGGGCACATCGAAATGGGTTCAGATTTCGCAGGC
GCGCATTGACGCCTTTGCCGATCTGACCGAAGACTGGCAGCCCATCCACCTTGACCCCGACGCCGCGCAATCAGCGGGGT
TCGCGGGCACCGTGGCGCATGGCTTTCTGACCCTCTCGATGCTTTCGGCGATGAGCTACGACGTGTTGCCCAGGATCAAA
GGGGAGAGTGCTTCGATCAACTATGGCTTCGACCGCGTTCGGTTTATTGCGCCGGTGCCCGCTGGTGCGCGTATCCGGAC
GCATTTTGACCTTGTCGAGGCCGGGCCACGGGGTGAGGGCTGGATGCTGCGACTGGCTGCCAACGTCGAAATCGAGGGCG
CGGATAAACCGGCGCTGACGGCGGATTGGCTGGCCTATTACCTGTTTTGA

Upstream 100 bases:

>100_bases
TCTATCTCGAAGAGAGCCTGAAGAAGGCGATCTGACGCTTGGCCCTGCGCCTTTGCGGCCCCGGTCGCGCAACGCGGCCC
TGGTCCATCAGATGGAGCGC

Downstream 100 bases:

>100_bases
TGGCGCGCGTGGGGCAGCGCTCCGCGTCATGTATGGTTTCGGCCCGACCTCCGGCCCCAAGCGTGAGGTCGCGCAGGTCA
ACCCTTGCCGACGTTCTCGG

Product: nodulation protein N-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MMLTRETLPQAVGKPLGTSKWVQISQARIDAFADLTEDWQPIHLDPDAAQSAGFAGTVAHGFLTLSMLSAMSYDVLPRIK
GESASINYGFDRVRFIAPVPAGARIRTHFDLVEAGPRGEGWMLRLAANVEIEGADKPALTADWLAYYLF

Sequences:

>Translated_149_residues
MMLTRETLPQAVGKPLGTSKWVQISQARIDAFADLTEDWQPIHLDPDAAQSAGFAGTVAHGFLTLSMLSAMSYDVLPRIK
GESASINYGFDRVRFIAPVPAGARIRTHFDLVEAGPRGEGWMLRLAANVEIEGADKPALTADWLAYYLF
>Mature_149_residues
MMLTRETLPQAVGKPLGTSKWVQISQARIDAFADLTEDWQPIHLDPDAAQSAGFAGTVAHGFLTLSMLSAMSYDVLPRIK
GESASINYGFDRVRFIAPVPAGARIRTHFDLVEAGPRGEGWMLRLAANVEIEGADKPALTADWLAYYLF

Specific function: Involved in the production of the root hair deformation (HAD) factor specifically on medicago [H]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To the R.meliloti counterpart [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 16308; Mature: 16308

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLTRETLPQAVGKPLGTSKWVQISQARIDAFADLTEDWQPIHLDPDAAQSAGFAGTVAH
CCCCHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHCCCCCEEEECCCCHHHCCCCHHHHH
GFLTLSMLSAMSYDVLPRIKGESASINYGFDRVRFIAPVPAGARIRTHFDLVEAGPRGEG
HHHHHHHHHHHCHHCCCCCCCCCCEEECCCCEEEEEECCCCCCEEEEEEHEEECCCCCCC
WMLRLAANVEIEGADKPALTADWLAYYLF
EEEEEEECEEECCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MMLTRETLPQAVGKPLGTSKWVQISQARIDAFADLTEDWQPIHLDPDAAQSAGFAGTVAH
CCCCHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHCCCCCEEEECCCCHHHCCCCHHHHH
GFLTLSMLSAMSYDVLPRIKGESASINYGFDRVRFIAPVPAGARIRTHFDLVEAGPRGEG
HHHHHHHHHHHCHHCCCCCCCCCCEEECCCCEEEEEECCCCCCEEEEEEHEEECCCCCCC
WMLRLAANVEIEGADKPALTADWLAYYLF
EEEEEEECEEECCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3132583 [H]