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The map label for this gene is nrfC [H]

Identifier: 110678320

GI number: 110678320

Start: 937364

End: 938122

Strand: Reverse

Name: nrfC [H]

Synonym: RD1_0974

Alternate gene names: 110678320

Gene position: 938122-937364 (Counterclockwise)

Preceding gene: 110678321

Following gene: 110678319

Centisome position: 22.7

GC content: 61.13

Gene sequence:

>759_bases
ATGACCACTCTGCCAGCCAAAACCGACAAGAAACTCGGCCTCGTCATCGACCTTGATACCTGCGTCGGCTGCCATGCCTG
TGTGATTTCCTGCAAAGGGTGGAACACGGAAAACTATGGTGCGCCCCTGTCGGATCAGAACGCCTATGGCGCGGACAACA
GCGGCACCTTCCTCAACCGCGTGCATTCTTACGAGGTGCAACCGGACGTCGGTGCCGCGCAGCTGATCCATTTCCCGAAA
TCCTGTCTGCATTGCGAGGACGCGCCCTGCGTGACGGTCTGCCCAACCGGGGCCAGCTACAAGCGCGTCGAGGATGGCAT
CGTGCTGGTCAATGAAAGCGACTGCATCGGTTGTGGCTTATGCGCCTGGGCCTGTCCCTACGGCGCGCGCGAGCTGGATC
AGGCCGAAGGTGTGATGAAGAAATGCACCCTCTGCGTGGACCGTATCTATAACGAAAACCTGCCCGAGGAAGACCGCGAA
CCTGCCTGCGTGCGCACCTGCCCGTCAAACGCCCGCCACTTCGGCGATCTGGGCGACCCGGACAGTGCCGTCAGCCAACT
GGTGGCAGAACGCGGCGGCATGGATCTGATGCCCGAACAGGGCACCAAGCCCGTCAACCAATACCTGCCACCGCGCCCGA
AGGATACATTGCCCGACGCAGGCCATGAATTCGATGTCCTCGCGCCCTTCCTCGAACCCATCGCCACGGAGCCGAAGGGC
TTTCTCAGCTGGCTCGACAAAACGCTGGAGAAGTTCTGA

Upstream 100 bases:

>100_bases
AAGGTAGGTAAATGATGCGCGCGCCTGCCACCGACGTGATACCGACGCAATACCGACGCCGAACCGACGTCGAAAAACCA
CTCCGGAATGAGGGCCACGC

Downstream 100 bases:

>100_bases
TGCACCCCGCCCCTTCTGTTATCTTCTTCACGACGTTCAGCGGCCTTGGCTTTGGCCTTCTGATCTGGCTGGGCATTGGC
ATGCCCGCTGTCACAGGCTG

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MTTLPAKTDKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQNAYGADNSGTFLNRVHSYEVQPDVGAAQLIHFPK
SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAEGVMKKCTLCVDRIYNENLPEEDRE
PACVRTCPSNARHFGDLGDPDSAVSQLVAERGGMDLMPEQGTKPVNQYLPPRPKDTLPDAGHEFDVLAPFLEPIATEPKG
FLSWLDKTLEKF

Sequences:

>Translated_252_residues
MTTLPAKTDKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQNAYGADNSGTFLNRVHSYEVQPDVGAAQLIHFPK
SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAEGVMKKCTLCVDRIYNENLPEEDRE
PACVRTCPSNARHFGDLGDPDSAVSQLVAERGGMDLMPEQGTKPVNQYLPPRPKDTLPDAGHEFDVLAPFLEPIATEPKG
FLSWLDKTLEKF
>Mature_251_residues
TTLPAKTDKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQNAYGADNSGTFLNRVHSYEVQPDVGAAQLIHFPKS
CLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAEGVMKKCTLCVDRIYNENLPEEDREP
ACVRTCPSNARHFGDLGDPDSAVSQLVAERGGMDLMPEQGTKPVNQYLPPRPKDTLPDAGHEFDVLAPFLEPIATEPKGF
LSWLDKTLEKF

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=200, Percent_Identity=37, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787749, Length=184, Percent_Identity=32.0652173913043, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787122, Length=183, Percent_Identity=33.879781420765, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790326, Length=194, Percent_Identity=32.9896907216495, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1787872, Length=185, Percent_Identity=34.5945945945946, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI226510944, Length=172, Percent_Identity=36.046511627907, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789370, Length=215, Percent_Identity=31.1627906976744, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87082180, Length=172, Percent_Identity=34.3023255813954, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787478, Length=126, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1787740, Length=126, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788811, Length=165, Percent_Identity=30.9090909090909, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789067, Length=176, Percent_Identity=34.0909090909091, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI2367245, Length=166, Percent_Identity=31.3253012048193, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789079, Length=202, Percent_Identity=30.1980198019802, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87082179, Length=165, Percent_Identity=29.6969696969697, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082114, Length=153, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27411; Mature: 27280

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
6.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLPAKTDKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQNAYGADNSGTFLNR
CCCCCCCCCCCEEEEEECHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
VHSYEVQPDVGAAQLIHFPKSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGL
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCCEEEEECCCCCHHHH
CAWACPYGARELDQAEGVMKKCTLCVDRIYNENLPEEDREPACVRTCPSNARHFGDLGDP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHCCCCCCH
DSAVSQLVAERGGMDLMPEQGTKPVNQYLPPRPKDTLPDAGHEFDVLAPFLEPIATEPKG
HHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
FLSWLDKTLEKF
HHHHHHHHHHHC
>Mature Secondary Structure 
TTLPAKTDKKLGLVIDLDTCVGCHACVISCKGWNTENYGAPLSDQNAYGADNSGTFLNR
CCCCCCCCCCEEEEEECHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
VHSYEVQPDVGAAQLIHFPKSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGL
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCCEEEEECCCCCHHHH
CAWACPYGARELDQAEGVMKKCTLCVDRIYNENLPEEDREPACVRTCPSNARHFGDLGDP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHCCCCCCH
DSAVSQLVAERGGMDLMPEQGTKPVNQYLPPRPKDTLPDAGHEFDVLAPFLEPIATEPKG
HHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHH
FLSWLDKTLEKF
HHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]