| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678290
Identifier: 110678290
GI number: 110678290
Start: 912722
End: 913909
Strand: Direct
Name: 110678290
Synonym: RD1_0943
Alternate gene names: NA
Gene position: 912722-913909 (Clockwise)
Preceding gene: 110678289
Following gene: 110678291
Centisome position: 22.08
GC content: 57.66
Gene sequence:
>1188_bases ATGCCAGAGCAAGCAGTTGAAATTCGGCTGATATCTTCCCTGCGGGAGATTGACCCGAAAGAGTGGGACGCCTGCGCCTG CCCTGAAGAAACCGGTGGCGCGCGCGCGATTGATCCTTTCACGACCCACCGGTTTCTCGATGCGTTGGAACAAAGCCGGT CCGTTGGTGCGGGCACGGGCTGGCAGCCGCAGTATCTGACCGCGTGGATATCGGGCAAGCTGATTGCCGTGGCCCCGATG TATGCCAAATCGCACAGTCAGGGCGAATATATTTTCGATCACAACTGGGCCCATGCCTACGAGCGCGCAGGGGGCAGATA TTATCCCAAACTTCAGATCGCGGTGCCGCATACGCCTGCGACGGGGCGACGTTTCCTGATTCGCCCCGGATTTGAGGAGA CCGGTTTCGCAGCACTCACCCAAGGGGCGGTCGAGTTGGCCACAAACAACCGTGTGTCGTCGCTCCACGTGACGTTTTGC ACGCAGCAAGAGGCAGAACGCGGCGCAGAATTGGGGCTGATGCGGCGCAAAACGCAGCAATTTCACTGGCTCAACGACAA ATACGCGAATTTTGACGCGTTTCTGGACTCGCTCAGCTCGCGCAAACGCAAGAACATCCGCAAGGAACGCGCAAAGGCGC AGGGCTTTGGCGGCACAATCCAAATCTTCACAGGTGATGAATTGCAGCCAGAGCATTGGGATGCGTTCTGGGCGTTCTAT CAGGATACCGGCGCGCGCAAATGGGGCACCCCCTATCTGACCCGCGCGTTTTTCGACGTGGCGCAGGAGACATTACGCAA CGACATGGCGCTCGTTCTGGCAGAACGGAACGGGCGCTGGGTTGCCGGCGCGCTGAATTTCATTGGCGCCAAGACCCTGT TTGGGCGCTATTGGGGCTGCACCGAACACCATCCGTTTTTGCATTTTGAACTGTGCTATTATCAGGCGATGGATCTTGCC ATTTCGCTCGGTCTTGACCGTGTTGAGGCGGGTGCTCAGGGCGAGCATAAATTGGCCCGCGGTTACTTGCCGACGCCAAC TTGGTCATTGCATTGGGTTGCCGATCCGGGTTTTAGAGACGCGATTGATCAATATCTGACGGCTGAACGCGAGGCCGTGG ATCAGGAAATCAGCGTGCTGACCACCTATGGTCCCTTCAAGCGCGCCAAAGTTGAGGAACAGGAATGA
Upstream 100 bases:
>100_bases ATTGCGGACAATATCACCTTCGAGAAATATCTCGCGCCAATTGCCGCTTGATCCCATGGGCTTGTGCCACACATAAGCCT TGTGAGATTGGGGCGCGATC
Downstream 100 bases:
>100_bases CAGAAAAGCTAAGCACCGAAACACGCGGCCCATTGCTGGAGCCGCTTTTCGCCTCAGGCTGGGAGATGGTCGAGGGGCGG GACGCGATCAAAAAGACGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MPEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTGWQPQYLTAWISGKLIAVAPM YAKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPATGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFC TQQEAERGAELGLMRRKTQQFHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFY QDTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGCTEHHPFLHFELCYYQAMDLA ISLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRDAIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE
Sequences:
>Translated_395_residues MPEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTGWQPQYLTAWISGKLIAVAPM YAKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPATGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFC TQQEAERGAELGLMRRKTQQFHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFY QDTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGCTEHHPFLHFELCYYQAMDLA ISLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRDAIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE >Mature_394_residues PEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTGWQPQYLTAWISGKLIAVAPMY AKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPATGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFCT QQEAERGAELGLMRRKTQQFHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFYQ DTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGCTEHHPFLHFELCYYQAMDLAI SLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRDAIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE
Specific function: Unknown
COG id: COG3146
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44836; Mature: 44705
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTG CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC WQPQYLTAWISGKLIAVAPMYAKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPA CCCHHEEHHHCCCEEEEEEHHHCCCCCCCEEEECCHHHHHHHCCCEECCEEEEEECCCCC TGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFCTQQEAERGAELGLMRRKTQQ CCCEEEEECCCCCCCHHHHHCCHHEEECCCCEEEEEEEEECHHHHHCCHHHHHHHHHHHH FHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFY HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH QDTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGC HHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCC TEHHPFLHFELCYYQAMDLAISLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRD CCCCCCEEEHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCCCCCEEEEEEECCCHHH AIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE HHHHHHHHHHHHHHHHHEEEEECCCCHHCCCCCCC >Mature Secondary Structure PEQAVEIRLISSLREIDPKEWDACACPEETGGARAIDPFTTHRFLDALEQSRSVGAGTG CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC WQPQYLTAWISGKLIAVAPMYAKSHSQGEYIFDHNWAHAYERAGGRYYPKLQIAVPHTPA CCCHHEEHHHCCCEEEEEEHHHCCCCCCCEEEECCHHHHHHHCCCEECCEEEEEECCCCC TGRRFLIRPGFEETGFAALTQGAVELATNNRVSSLHVTFCTQQEAERGAELGLMRRKTQQ CCCEEEEECCCCCCCHHHHHCCHHEEECCCCEEEEEEEEECHHHHHCCHHHHHHHHHHHH FHWLNDKYANFDAFLDSLSSRKRKNIRKERAKAQGFGGTIQIFTGDELQPEHWDAFWAFY HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH QDTGARKWGTPYLTRAFFDVAQETLRNDMALVLAERNGRWVAGALNFIGAKTLFGRYWGC HHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCC TEHHPFLHFELCYYQAMDLAISLGLDRVEAGAQGEHKLARGYLPTPTWSLHWVADPGFRD CCCCCCEEEHHHHHHHHHHHHHHCHHHHHCCCCCCHHHHCCCCCCCCEEEEEEECCCHHH AIDQYLTAEREAVDQEISVLTTYGPFKRAKVEEQE HHHHHHHHHHHHHHHHHEEEEECCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA