| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is bvgS [H]
Identifier: 110678228
GI number: 110678228
Start: 857107
End: 859299
Strand: Direct
Name: bvgS [H]
Synonym: RD1_0881
Alternate gene names: 110678228
Gene position: 857107-859299 (Clockwise)
Preceding gene: 110678227
Following gene: 110678229
Centisome position: 20.74
GC content: 58.69
Gene sequence:
>2193_bases ATGCGCCGCGCGGGTCGGCAAAAAGACGTCGGCCCGTCTGCCTACCGTGCCTTTCAGTCTGCCATTGAATTGCAGCAAAA GATGGCCGCGCAGTCGCTCGAACTTGAAAGTGTCCGCTATGAACGGGAACGCACGCGCAAGACCCTCGCGGAGGCGCTGG GGTCGATGGAAGGGGGCCTTGCGCTTTTCTCCGACGGGACGCTGAACATCTGCAACGACCTGTTCAAAGGCCTGCTGCCG GATATTTCGGATCAGATCGTGCCGGGGCTGAGCCTTGCGCGGTACTTTGATCTGATGAGCAGCAGCGAATATCTGATCTC GACGGATCGCAAGCTGTTCACCATGCGCGGCGCGTTGGAGAGTGATCAGAACGAAGGGTCGGTCGTATCCTTGGTGGCAG AGGTTGCCAAGGACCGCTGGTATCAGATGAGCACGCAGCAGACATCGCCGGAGAACACGGTTCTGCTGCTGACGGAAATC ACCGCGCTGGTGCGCCACAACCGGCGCGAAAAAGAGCATTTGATCGACCGTCAGGCGGATTACCTGCAAGCGGTATTCCA GAACATGAGTTCGGGTGTTTGTACGTTTTCGGCCACCGGCGAGTTGATGATGCAAAACGGCCAGTTCCGCAGTATTCTGG GTGTGCCACTCAGCGTGTTGCAGCCGGGCACGCCGTTGCAGGAATTGCTGGATTTCATGCGGTCCAAATCGCTGATCACG GATAACGCCCTGTTGCAGATGGACGCCTGGCGGGACGAACTGAACAGGAAGGGGGCCGTGAGCACGCGGGTGTCGCATGG TGCCGCGCGGGTGCTTGATGTTCAGGCCAACCTTTTGCCGGATGGCGGTTTTCTGGTGGAGTTGAAAGACGTGACGCTGG AGGTCCGCTCTACCGAGATGCTGGAAAACCGTGTGATGGAGCGTACCGCAGAGCTGACCCGCGCGAATGCGAATCTGACC GAACAATATGAGGAAAAAGCCCGCGTTGAAGAAGAACTGCGCGTGGCAAAAGAACGCGCGGAGGCCGCCGTGTCATCAAA AACACGGTTCCTGGCGGCGGCCAGCCACGATCTTCTGCAGCCGATCAATGCCGCGAAACTGCTGATTTCCTCCTTGCAGG AAACCACCCGCGAAACGCGCTTTCGCCCGATGGTCGAACGGCTGGAAGGCGCCTTTGCCTCGGCGGAATACCTGCTGCAT TCGCTGCTGGATATTTCACGACTGGAAAGCGCGGACCTTGACACGGTGACGACGACAAACGTCAGCCTTGAGGGGTTCAT GCTTGGCATCAAGGCCGATCAGATGATGCTGGCGGCGCAGAAATCGGTTCAGTTTCATGTTGTGCCCTGCAGTCTGGTGG TGCGCTCTGATCCGGTTTATCTGCTGCGCTCCATTCAGAACCTAGTGGTGAATGCCATTCAATATACCGATCCGGGGGGG CGGGTGCTGCTGGGGTGCAGGCGCACCGGAGACACGGTCGTGCTGGAGGTCTGGGACACCGGCATCGGGATCAATATCAA GGACCAGTCGCGTATCTTTGACGCCTTCACACGCGCAGAAAACGTGCCGATAGGTTCCGGGGTTGGTCTGGGTCTGTCGG TGGTCGACAGAGCGTGCCGTCTGTTGGGTCACAAGCTTTCGGTGCGTTCAAAACCCGGTGTCGGCTCCGTTTTCAGCATT GAGATGGAGGTGGTCAAGGGCGCGCCCAGCATGCCTATTCTGCAAGGTCCCATTGAGGACACGGCGGATGCGGCCCTAGA TTACATCGTGATGGTCATCGAAAATGACGCTGATGTGCTTTACGGCGTGACGCAGCGGCTGGAGCTTTGGGGCGCGAGCG TGCTGGCGGCACGTACCACTGCTGAAGCGCTCGATTTCATTGATGATCTGGGAATGCCACCCGATATCATTCTGGCCGAT TATCAATTGGACGCCGGTGAAACCGGTGTACAGGCGACCCTTGATCTGCGCGCCAAGACCGGCACTGCGATCCCTGCGAT CCTGATCACGGCGGACCGTAGCGAAACAGTGCGTCGCCTCGGTGCGCAGCATGATATGTCTGTGATGACCAAACCTGCGG AGTTGTCGCGCCTGCGACGGCTGGTGGATTGGAAGGTGCGTGGCCGTGCCGCCCGCGCCGATACGTCTCATAAAAGGGTA CATACAAAAGTCGAAGGTGACAGTCCCGCATGA
Upstream 100 bases:
>100_bases TTTTTGCACCTGAGCCGAGGGTTTTGTTTTGAGTATGATCAACCCTGATGACCCGCTTGAGGTAAGGGTCGAAAAGCAGG CCAAGATCATCGAGGCGCTG
Downstream 100 bases:
>100_bases GGCCCGCACACTCATATTCAGGAGGAAGCCCATATGTTTAGATTCCCAGCCATCCTATTTGCGATGTTTCTGGCCACAGG AATGGCGGTTGCCGCCCCCG
Product: histidine kinase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MRRAGRQKDVGPSAYRAFQSAIELQQKMAAQSLELESVRYERERTRKTLAEALGSMEGGLALFSDGTLNICNDLFKGLLP DISDQIVPGLSLARYFDLMSSSEYLISTDRKLFTMRGALESDQNEGSVVSLVAEVAKDRWYQMSTQQTSPENTVLLLTEI TALVRHNRREKEHLIDRQADYLQAVFQNMSSGVCTFSATGELMMQNGQFRSILGVPLSVLQPGTPLQELLDFMRSKSLIT DNALLQMDAWRDELNRKGAVSTRVSHGAARVLDVQANLLPDGGFLVELKDVTLEVRSTEMLENRVMERTAELTRANANLT EQYEEKARVEEELRVAKERAEAAVSSKTRFLAAASHDLLQPINAAKLLISSLQETTRETRFRPMVERLEGAFASAEYLLH SLLDISRLESADLDTVTTTNVSLEGFMLGIKADQMMLAAQKSVQFHVVPCSLVVRSDPVYLLRSIQNLVVNAIQYTDPGG RVLLGCRRTGDTVVLEVWDTGIGINIKDQSRIFDAFTRAENVPIGSGVGLGLSVVDRACRLLGHKLSVRSKPGVGSVFSI EMEVVKGAPSMPILQGPIEDTADAALDYIVMVIENDADVLYGVTQRLELWGASVLAARTTAEALDFIDDLGMPPDIILAD YQLDAGETGVQATLDLRAKTGTAIPAILITADRSETVRRLGAQHDMSVMTKPAELSRLRRLVDWKVRGRAARADTSHKRV HTKVEGDSPA
Sequences:
>Translated_730_residues MRRAGRQKDVGPSAYRAFQSAIELQQKMAAQSLELESVRYERERTRKTLAEALGSMEGGLALFSDGTLNICNDLFKGLLP DISDQIVPGLSLARYFDLMSSSEYLISTDRKLFTMRGALESDQNEGSVVSLVAEVAKDRWYQMSTQQTSPENTVLLLTEI TALVRHNRREKEHLIDRQADYLQAVFQNMSSGVCTFSATGELMMQNGQFRSILGVPLSVLQPGTPLQELLDFMRSKSLIT DNALLQMDAWRDELNRKGAVSTRVSHGAARVLDVQANLLPDGGFLVELKDVTLEVRSTEMLENRVMERTAELTRANANLT EQYEEKARVEEELRVAKERAEAAVSSKTRFLAAASHDLLQPINAAKLLISSLQETTRETRFRPMVERLEGAFASAEYLLH SLLDISRLESADLDTVTTTNVSLEGFMLGIKADQMMLAAQKSVQFHVVPCSLVVRSDPVYLLRSIQNLVVNAIQYTDPGG RVLLGCRRTGDTVVLEVWDTGIGINIKDQSRIFDAFTRAENVPIGSGVGLGLSVVDRACRLLGHKLSVRSKPGVGSVFSI EMEVVKGAPSMPILQGPIEDTADAALDYIVMVIENDADVLYGVTQRLELWGASVLAARTTAEALDFIDDLGMPPDIILAD YQLDAGETGVQATLDLRAKTGTAIPAILITADRSETVRRLGAQHDMSVMTKPAELSRLRRLVDWKVRGRAARADTSHKRV HTKVEGDSPA >Mature_730_residues MRRAGRQKDVGPSAYRAFQSAIELQQKMAAQSLELESVRYERERTRKTLAEALGSMEGGLALFSDGTLNICNDLFKGLLP DISDQIVPGLSLARYFDLMSSSEYLISTDRKLFTMRGALESDQNEGSVVSLVAEVAKDRWYQMSTQQTSPENTVLLLTEI TALVRHNRREKEHLIDRQADYLQAVFQNMSSGVCTFSATGELMMQNGQFRSILGVPLSVLQPGTPLQELLDFMRSKSLIT DNALLQMDAWRDELNRKGAVSTRVSHGAARVLDVQANLLPDGGFLVELKDVTLEVRSTEMLENRVMERTAELTRANANLT EQYEEKARVEEELRVAKERAEAAVSSKTRFLAAASHDLLQPINAAKLLISSLQETTRETRFRPMVERLEGAFASAEYLLH SLLDISRLESADLDTVTTTNVSLEGFMLGIKADQMMLAAQKSVQFHVVPCSLVVRSDPVYLLRSIQNLVVNAIQYTDPGG RVLLGCRRTGDTVVLEVWDTGIGINIKDQSRIFDAFTRAENVPIGSGVGLGLSVVDRACRLLGHKLSVRSKPGVGSVFSI EMEVVKGAPSMPILQGPIEDTADAALDYIVMVIENDADVLYGVTQRLELWGASVLAARTTAEALDFIDDLGMPPDIILAD YQLDAGETGVQATLDLRAKTGTAIPAILITADRSETVRRLGAQHDMSVMTKPAELSRLRRLVDWKVRGRAARADTSHKRV HTKVEGDSPA
Specific function: Member of the two-component regulatory system BvgS/BvgA. Phosphorylates BvgA via a four-step phosphorelay in response to environmental signals [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI145693157, Length=254, Percent_Identity=32.2834645669291, Blast_Score=101, Evalue=1e-22, Organism=Escherichia coli, GI1789149, Length=327, Percent_Identity=27.82874617737, Blast_Score=91, Evalue=4e-19, Organism=Escherichia coli, GI87081816, Length=362, Percent_Identity=26.7955801104972, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI48994928, Length=310, Percent_Identity=25.1612903225806, Blast_Score=77, Evalue=5e-15, Organism=Escherichia coli, GI1788713, Length=248, Percent_Identity=26.6129032258064, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1790861, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1786912, Length=238, Percent_Identity=24.3697478991597, Blast_Score=67, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR001638 - InterPro: IPR004358 - InterPro: IPR008207 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF01627 Hpt; PF00989 PAS; PF00072 Response_reg; PF00497 SBP_bac_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 80454; Mature: 80454
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRAGRQKDVGPSAYRAFQSAIELQQKMAAQSLELESVRYERERTRKTLAEALGSMEGGL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE ALFSDGTLNICNDLFKGLLPDISDQIVPGLSLARYFDLMSSSEYLISTDRKLFTMRGALE EEECCCCHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCEEEECCCHHEEECCCCC SDQNEGSVVSLVAEVAKDRWYQMSTQQTSPENTVLLLTEITALVRHNRREKEHLIDRQAD CCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHH YLQAVFQNMSSGVCTFSATGELMMQNGQFRSILGVPLSVLQPGTPLQELLDFMRSKSLIT HHHHHHHHHCCCEEEEECCCHHEECCCCCHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCC DNALLQMDAWRDELNRKGAVSTRVSHGAARVLDVQANLLPDGGFLVELKDVTLEVRSTEM CCHHEEHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCCCCCCEEEEEECCEEEHHHHHH LENRVMERTAELTRANANLTEQYEEKARVEEELRVAKERAEAAVSSKTRFLAAASHDLLQ HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PINAAKLLISSLQETTRETRFRPMVERLEGAFASAEYLLHSLLDISRLESADLDTVTTTN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECC VSLEGFMLGIKADQMMLAAQKSVQFHVVPCSLVVRSDPVYLLRSIQNLVVNAIQYTDPGG EEEEEEEEEECHHHHHHHHHCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC RVLLGCRRTGDTVVLEVWDTGIGINIKDQSRIFDAFTRAENVPIGSGVGLGLSVVDRACR CEEEEEECCCCEEEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH LLGHKLSVRSKPGVGSVFSIEMEVVKGAPSMPILQGPIEDTADAALDYIVMVIENDADVL HHCCCCCCCCCCCCCCEEEEEEHEECCCCCCCEECCCCCHHHHHHHHEEEEEEECCCHHH YGVTQRLELWGASVLAARTTAEALDFIDDLGMPPDIILADYQLDAGETGVQATLDLRAKT HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCC GTAIPAILITADRSETVRRLGAQHDMSVMTKPAELSRLRRLVDWKVRGRAARADTSHKRV CCCCCEEEEECCCHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHE HTKVEGDSPA EEECCCCCCC >Mature Secondary Structure MRRAGRQKDVGPSAYRAFQSAIELQQKMAAQSLELESVRYERERTRKTLAEALGSMEGGL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE ALFSDGTLNICNDLFKGLLPDISDQIVPGLSLARYFDLMSSSEYLISTDRKLFTMRGALE EEECCCCHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCEEEECCCHHEEECCCCC SDQNEGSVVSLVAEVAKDRWYQMSTQQTSPENTVLLLTEITALVRHNRREKEHLIDRQAD CCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHH YLQAVFQNMSSGVCTFSATGELMMQNGQFRSILGVPLSVLQPGTPLQELLDFMRSKSLIT HHHHHHHHHCCCEEEEECCCHHEECCCCCHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCC DNALLQMDAWRDELNRKGAVSTRVSHGAARVLDVQANLLPDGGFLVELKDVTLEVRSTEM CCHHEEHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCCCCCCEEEEEECCEEEHHHHHH LENRVMERTAELTRANANLTEQYEEKARVEEELRVAKERAEAAVSSKTRFLAAASHDLLQ HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PINAAKLLISSLQETTRETRFRPMVERLEGAFASAEYLLHSLLDISRLESADLDTVTTTN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECC VSLEGFMLGIKADQMMLAAQKSVQFHVVPCSLVVRSDPVYLLRSIQNLVVNAIQYTDPGG EEEEEEEEEECHHHHHHHHHCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC RVLLGCRRTGDTVVLEVWDTGIGINIKDQSRIFDAFTRAENVPIGSGVGLGLSVVDRACR CEEEEEECCCCEEEEEEECCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH LLGHKLSVRSKPGVGSVFSIEMEVVKGAPSMPILQGPIEDTADAALDYIVMVIENDADVL HHCCCCCCCCCCCCCCEEEEEEHEECCCCCCCEECCCCCHHHHHHHHEEEEEEECCCHHH YGVTQRLELWGASVLAARTTAEALDFIDDLGMPPDIILADYQLDAGETGVQATLDLRAKT HHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEECCC GTAIPAILITADRSETVRRLGAQHDMSVMTKPAELSRLRRLVDWKVRGRAARADTSHKRV CCCCCEEEEECCCHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHE HTKVEGDSPA EEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1791760; 12910271 [H]