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The map label for this gene is 110678162

Identifier: 110678162

GI number: 110678162

Start: 785824

End: 787908

Strand: Direct

Name: 110678162

Synonym: RD1_0805

Alternate gene names: NA

Gene position: 785824-787908 (Clockwise)

Preceding gene: 110678161

Following gene: 110678163

Centisome position: 19.01

GC content: 52.37

Gene sequence:

>2085_bases
ATGTCCTTTGAGACCCTGAAACTCCCTTTTTATGTCACCACCAGCGAGCATGAACCGGTGGCAGATTTTTTCAATCCGGT
TCTTGAGCATGCGCAGCAATATGACATTGCTGTCGGATACTTTAGCAGCGCGTGGATGCGCGATGCAGCCCATGGAATGG
CAACTTTTGCACTCAACGGTGGCAAAGCCAGATGGGTGATTTCTCCCGAAATCTCTTTGGAAGACTTCGAGAGCCTACAG
GTTGACGGTCAGTTTTCAAATGAGCGTATCCGAGAACTCATTTCTCGGTCATATGAAGACCTCTACGAGCACCTTTCGCA
GTATACGCGTGAGGCACTCGGATGGCTTCTTCATGATGGCGTATTGACCTTCAAAGTAGGCATTCCGAAGAACAGGCTGT
CCGGAATCCTGCATGCGAAACAGGGCATCTTCACGGATGAGTTTGGAAACCGAGTCGGCTTCCAAGGATCTTATAATTTG
ACCGGTGGAGCCGGCACCAATTGGGAAGCTTTCAGCGTCTTTTGTGATTGGAAATCAAGCGAAAGCCAGGAACGGAACAA
CCACATCGCTGCGTCCTTCGACAGAATGTGGAGAGGACTGGATCCAAACCTAGCACTGTTTGACCCTTCTTCAGCAGATC
TTGAGCGGTTTGTCAGCGCGGCCAGGGATAGCTCCCGACACTACGATTTGTTCCCGCCTGAAAAACCAAGCTCTCCCCGT
GTGCCCGAACACTTTCTGACTAACGGGCGTCTGCGGGGCTACCAAGAAGAGGGAATCCGTAAATGGTTCAAGAACAATGG
CCGCGGAGTTCTCCACATGGCAACGGGAACCGGCAAGACCGTGACTGCGTTAACTGCTGTGACGCGGCTGAATGATTTTG
TCGCTCAAAAGAACGGCCAGCTTTGCATCGTCGTTACGGTTCCATATCAACATCTCGCAGAACAGTGGGCCGGGGAAGCC
GAAGAGTTCGGCTTCGAACCCATTTTGTGCTACGGCGGCGTCAACCGCTGGATGGAGGAGTGCCAGAGGCGCCTGAATGA
ACTGCGATCAAAGGCAACGCAGCACGTGATGCTCATCGCGGTCAATGCGTCTATGGCAGATAAACCGTTCCAGTCGGTCC
TGGGTTCCTTTGATGGAAACATCCTATTCGTTGGCGATGAGGCGCATAATTTGGGTGCGCCGTCCAACCTACAGGCCCTT
CCGGAGCGTGCAGCCTTTAGACTTGGACTGACGGCGACGCCTGATCGCTACGGGGATGAGGAAGGCACCGACGCTCTCAA
AAGGTATTTCGGAGAGATCGTTTTGGACTACGGCTTGGACAAGGCGATCAGCGGCGGTCACCTTTGCCGATATCTTTACT
ATCCGATCCTCGTGCACTTGGATGAAGACGAACAAGACGAGTATGCGGAGCTCTCCGTACGAATCGGCAGACTTTTTGGC
CAAGCAGCCAAGCTGGAAAGCGACAAAGGCGAACAGCTAAACCGTTTGTTGATCAAACGGGCACGCCTGATCGGAAAAGC
GCGAAACAAGCTGCCGGAGCTGATCAAGCTTCTCAAGCAGCAGGGAGAGGTCTCTCATACTCTGATATATTGCGGCGACA
GCAAAGAAGATGGGCATCGATACATCGACACTGCACTTGCCAGGGTAGGCGGTGAACTCGGACTAAGAGCGAGCCCGTTC
ACTTCGGAAGAGAACAACGACGAAAGGTCCAGATTATTGAAGCAGTTCGCGGCGGGTGACATACAGGCACTGCTGGCTAT
CCGATGCCTGGACGAAGGTGTTGACGTACCAATGACACGGACTGCGTACATCTTGGCTTCGTCTGCAAACCCAAAAGAAT
TTGTCCAACGACGGGGCAGAGTACTTCGGCGGTCCAAAGGGAAAAACCGTGCTTACATCTATGATTTCATCGTTGTGCCA
GATCTTGAACAATTATCAGACCAGGCTCCATCTAACGTAGAGCGGTCCCTGATGAAACGCGAACTGTCTAGGTTCAATGA
ATTTGCGACGCTTGCAGAAAACCACGGTGAAGCGCTCTCGACGATCACAGAAATCAAGAAGTGCCTTAACCTCCTTGACC
ACTAG

Upstream 100 bases:

>100_bases
ACCTGACCCGGCTCGACCACCTGTTTGCAAATAAGCAAGAAGAGCCGGACGAAGGTGAAGAAATGCTCGGGATGATACTC
GGGGACTTTGGTATAAATTG

Downstream 100 bases:

>100_bases
CGCATATGATTCAGAAGTTACTAGAAAAGGCGTTACGAATGAGTGAGAACAACAAGTCTCCAAAACAAGTTCTTGAAGCT
GCGTCTCCGAAGGCCCGTAA

Product: helicase domain-containing protein

Products: NA

Alternate protein names: Type III Restriction Res Subunit; DNA Repair Helicase; Type III Restriction Res Subunit Family; Helicase; DNA Repair Helicase RAD; Helicase Domain Protein; DNA Repair Helicase Rad; Helicase Domain-Containing Protein; DNA Repair Protein; Helicase-Like; Superfamily II DNA/RNA Helicase; SNF2 Family DNA/RNA Helicase; ATP-Dependent Helicase; DNA/RNA Helicase; DNA-Repair Protein; DNA Repair Protein Rad; DNA-Repair Helicase; Helicase-Like Protein; Helicase DNA Repair; Helicase DNA Repair Rad; DEAD/H Helicase; Phage Related Helicase; XPB/RAD25-Related Helicase; DNA Repair Protein RAD; Helicase ATP-Dependent; Type III Restriction- System Subunit Res; DEAD/DEAH Family Helicase; Restriction; DEAD/DEAH Box Helicase Domain-Containing Protein; DNA Helicase; RNA Polymerase Sigma

Number of amino acids: Translated: 694; Mature: 693

Protein sequence:

>694_residues
MSFETLKLPFYVTTSEHEPVADFFNPVLEHAQQYDIAVGYFSSAWMRDAAHGMATFALNGGKARWVISPEISLEDFESLQ
VDGQFSNERIRELISRSYEDLYEHLSQYTREALGWLLHDGVLTFKVGIPKNRLSGILHAKQGIFTDEFGNRVGFQGSYNL
TGGAGTNWEAFSVFCDWKSSESQERNNHIAASFDRMWRGLDPNLALFDPSSADLERFVSAARDSSRHYDLFPPEKPSSPR
VPEHFLTNGRLRGYQEEGIRKWFKNNGRGVLHMATGTGKTVTALTAVTRLNDFVAQKNGQLCIVVTVPYQHLAEQWAGEA
EEFGFEPILCYGGVNRWMEECQRRLNELRSKATQHVMLIAVNASMADKPFQSVLGSFDGNILFVGDEAHNLGAPSNLQAL
PERAAFRLGLTATPDRYGDEEGTDALKRYFGEIVLDYGLDKAISGGHLCRYLYYPILVHLDEDEQDEYAELSVRIGRLFG
QAAKLESDKGEQLNRLLIKRARLIGKARNKLPELIKLLKQQGEVSHTLIYCGDSKEDGHRYIDTALARVGGELGLRASPF
TSEENNDERSRLLKQFAAGDIQALLAIRCLDEGVDVPMTRTAYILASSANPKEFVQRRGRVLRRSKGKNRAYIYDFIVVP
DLEQLSDQAPSNVERSLMKRELSRFNEFATLAENHGEALSTITEIKKCLNLLDH

Sequences:

>Translated_694_residues
MSFETLKLPFYVTTSEHEPVADFFNPVLEHAQQYDIAVGYFSSAWMRDAAHGMATFALNGGKARWVISPEISLEDFESLQ
VDGQFSNERIRELISRSYEDLYEHLSQYTREALGWLLHDGVLTFKVGIPKNRLSGILHAKQGIFTDEFGNRVGFQGSYNL
TGGAGTNWEAFSVFCDWKSSESQERNNHIAASFDRMWRGLDPNLALFDPSSADLERFVSAARDSSRHYDLFPPEKPSSPR
VPEHFLTNGRLRGYQEEGIRKWFKNNGRGVLHMATGTGKTVTALTAVTRLNDFVAQKNGQLCIVVTVPYQHLAEQWAGEA
EEFGFEPILCYGGVNRWMEECQRRLNELRSKATQHVMLIAVNASMADKPFQSVLGSFDGNILFVGDEAHNLGAPSNLQAL
PERAAFRLGLTATPDRYGDEEGTDALKRYFGEIVLDYGLDKAISGGHLCRYLYYPILVHLDEDEQDEYAELSVRIGRLFG
QAAKLESDKGEQLNRLLIKRARLIGKARNKLPELIKLLKQQGEVSHTLIYCGDSKEDGHRYIDTALARVGGELGLRASPF
TSEENNDERSRLLKQFAAGDIQALLAIRCLDEGVDVPMTRTAYILASSANPKEFVQRRGRVLRRSKGKNRAYIYDFIVVP
DLEQLSDQAPSNVERSLMKRELSRFNEFATLAENHGEALSTITEIKKCLNLLDH
>Mature_693_residues
SFETLKLPFYVTTSEHEPVADFFNPVLEHAQQYDIAVGYFSSAWMRDAAHGMATFALNGGKARWVISPEISLEDFESLQV
DGQFSNERIRELISRSYEDLYEHLSQYTREALGWLLHDGVLTFKVGIPKNRLSGILHAKQGIFTDEFGNRVGFQGSYNLT
GGAGTNWEAFSVFCDWKSSESQERNNHIAASFDRMWRGLDPNLALFDPSSADLERFVSAARDSSRHYDLFPPEKPSSPRV
PEHFLTNGRLRGYQEEGIRKWFKNNGRGVLHMATGTGKTVTALTAVTRLNDFVAQKNGQLCIVVTVPYQHLAEQWAGEAE
EFGFEPILCYGGVNRWMEECQRRLNELRSKATQHVMLIAVNASMADKPFQSVLGSFDGNILFVGDEAHNLGAPSNLQALP
ERAAFRLGLTATPDRYGDEEGTDALKRYFGEIVLDYGLDKAISGGHLCRYLYYPILVHLDEDEQDEYAELSVRIGRLFGQ
AAKLESDKGEQLNRLLIKRARLIGKARNKLPELIKLLKQQGEVSHTLIYCGDSKEDGHRYIDTALARVGGELGLRASPFT
SEENNDERSRLLKQFAAGDIQALLAIRCLDEGVDVPMTRTAYILASSANPKEFVQRRGRVLRRSKGKNRAYIYDFIVVPD
LEQLSDQAPSNVERSLMKRELSRFNEFATLAENHGEALSTITEIKKCLNLLDH

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78171; Mature: 78040

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFETLKLPFYVTTSEHEPVADFFNPVLEHAQQYDIAVGYFSSAWMRDAAHGMATFALNG
CCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCEEEEEECC
GKARWVISPEISLEDFESLQVDGQFSNERIRELISRSYEDLYEHLSQYTREALGWLLHDG
CEEEEEECCCCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VLTFKVGIPKNRLSGILHAKQGIFTDEFGNRVGFQGSYNLTGGAGTNWEAFSVFCDWKSS
EEEEEECCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
ESQERNNHIAASFDRMWRGLDPNLALFDPSSADLERFVSAARDSSRHYDLFPPEKPSSPR
CCHHHCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VPEHFLTNGRLRGYQEEGIRKWFKNNGRGVLHMATGTGKTVTALTAVTRLNDFVAQKNGQ
CCHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
LCIVVTVPYQHLAEQWAGEAEEFGFEPILCYGGVNRWMEECQRRLNELRSKATQHVMLIA
EEEEEECCHHHHHHHHCCCHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCEEEEEE
VNASMADKPFQSVLGSFDGNILFVGDEAHNLGAPSNLQALPERAAFRLGLTATPDRYGDE
ECCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCC
EGTDALKRYFGEIVLDYGLDKAISGGHLCRYLYYPILVHLDEDEQDEYAELSVRIGRLFG
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHH
QAAKLESDKGEQLNRLLIKRARLIGKARNKLPELIKLLKQQGEVSHTLIYCGDSKEDGHR
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
YIDTALARVGGELGLRASPFTSEENNDERSRLLKQFAAGDIQALLAIRCLDEGVDVPMTR
HHHHHHHHHCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
TAYILASSANPKEFVQRRGRVLRRSKGKNRAYIYDFIVVPDLEQLSDQAPSNVERSLMKR
EEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHCCCCCHHHHHHHHH
ELSRFNEFATLAENHGEALSTITEIKKCLNLLDH
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SFETLKLPFYVTTSEHEPVADFFNPVLEHAQQYDIAVGYFSSAWMRDAAHGMATFALNG
CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHCCEEEEEECC
GKARWVISPEISLEDFESLQVDGQFSNERIRELISRSYEDLYEHLSQYTREALGWLLHDG
CEEEEEECCCCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VLTFKVGIPKNRLSGILHAKQGIFTDEFGNRVGFQGSYNLTGGAGTNWEAFSVFCDWKSS
EEEEEECCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
ESQERNNHIAASFDRMWRGLDPNLALFDPSSADLERFVSAARDSSRHYDLFPPEKPSSPR
CCHHHCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VPEHFLTNGRLRGYQEEGIRKWFKNNGRGVLHMATGTGKTVTALTAVTRLNDFVAQKNGQ
CCHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
LCIVVTVPYQHLAEQWAGEAEEFGFEPILCYGGVNRWMEECQRRLNELRSKATQHVMLIA
EEEEEECCHHHHHHHHCCCHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCEEEEEE
VNASMADKPFQSVLGSFDGNILFVGDEAHNLGAPSNLQALPERAAFRLGLTATPDRYGDE
ECCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCC
EGTDALKRYFGEIVLDYGLDKAISGGHLCRYLYYPILVHLDEDEQDEYAELSVRIGRLFG
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHH
QAAKLESDKGEQLNRLLIKRARLIGKARNKLPELIKLLKQQGEVSHTLIYCGDSKEDGHR
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
YIDTALARVGGELGLRASPFTSEENNDERSRLLKQFAAGDIQALLAIRCLDEGVDVPMTR
HHHHHHHHHCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC
TAYILASSANPKEFVQRRGRVLRRSKGKNRAYIYDFIVVPDLEQLSDQAPSNVERSLMKR
EEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHCCCCCHHHHHHHHH
ELSRFNEFATLAENHGEALSTITEIKKCLNLLDH
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA