| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yihV [H]
Identifier: 110678108
GI number: 110678108
Start: 718424
End: 719293
Strand: Direct
Name: yihV [H]
Synonym: RD1_0745
Alternate gene names: 110678108
Gene position: 718424-719293 (Clockwise)
Preceding gene: 110678098
Following gene: 110678109
Centisome position: 17.38
GC content: 60.34
Gene sequence:
>870_bases GTGCCCCATATCCTCTGCGCCGGTCTGATTACCGTTGATTTTACATTTGAGACAGATGGTTTCCCAGTCGAGGGAAACAA GCACCAGGCGCGGATGTCGCGTATGATGCCCGGCGGTGGTGCGTTGCTGGCAGCCTCTGCGATTGCAAAGCTTGGTGGAC GTGTGGATCTAAAAGGCTGCGTCGGCGATGACGCGTTAGGCGCGCATGTGCGGGAAACCCTTTGCGCACGGGGCATTGGC ACGGACCACCTACAAACGATAGCGGGCACGGGTACAGCGCGATCCGCCGTGATCGTCAGCGATGCCGGTGAGCGCACAAT CATCAACCACCGCGCGCAAGCACTGTTTCCTGAAACGCCTGACATCCAATTTGATCATGATGCCGCCCTGGTCGATACCC GCTGGCCCGGCGCTGCCGTTCGTATCTTGCGAGCGGCGCGGATGGCCGGAAAATTGGGTGTGATTGATGCCGAAAGCCCG GTGCGCCTGTGTCACGAAGCTCTGCCATTGGCGAGCCACATCATTTTTTCCGAACAGGGCTTGAGCGATTATGCCGGGGC CTGCGACGCGGCAGCCCTGTCAGATGTCGCCCATGAACTGGGTGTCTGGGTTGCAGTTACCCGCGGGGCGCGCCCGGTCT TGTGCCATGATGGTGTAACCTTGACGCAGGTCTTGCCTTGTAAGGTGGATGCTGTGGATACTCTGGGCGCGGGTGACGTG TGGCATGGGGCTTTCACGCTCGCCCTTGCGCGCGGCGAAACTGCGGTTGCGGCGGCAAAATTTGGTAACGCAGCGGCGGC TGCAAAAGTGACGATGCCCGGGGGTCGTATGCCAGATCAGACAGACGTGGCGGCTTTCCTTGACTGTTGA
Upstream 100 bases:
>100_bases ATTTTTCCCCCGTGTAAATACTGATAAGTTCACCAGCTGCGCGTTGACTGTCAAGCTAACATGTTAGACTGTTGTTGAAA ATAGTCACTTAGGTCTTGCA
Downstream 100 bases:
>100_bases TCTGAGGTGTCGGCGGCTGTGCTCACGCCAACTTGGTGCCGCATCGCGTTCATAGCGGTGCGGATGATTTTTAAATCGCA TGCGGACAGGATGACGGCGG
Product: sugar kinase yihV, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MPHILCAGLITVDFTFETDGFPVEGNKHQARMSRMMPGGGALLAASAIAKLGGRVDLKGCVGDDALGAHVRETLCARGIG TDHLQTIAGTGTARSAVIVSDAGERTIINHRAQALFPETPDIQFDHDAALVDTRWPGAAVRILRAARMAGKLGVIDAESP VRLCHEALPLASHIIFSEQGLSDYAGACDAAALSDVAHELGVWVAVTRGARPVLCHDGVTLTQVLPCKVDAVDTLGAGDV WHGAFTLALARGETAVAAAKFGNAAAAAKVTMPGGRMPDQTDVAAFLDC
Sequences:
>Translated_289_residues MPHILCAGLITVDFTFETDGFPVEGNKHQARMSRMMPGGGALLAASAIAKLGGRVDLKGCVGDDALGAHVRETLCARGIG TDHLQTIAGTGTARSAVIVSDAGERTIINHRAQALFPETPDIQFDHDAALVDTRWPGAAVRILRAARMAGKLGVIDAESP VRLCHEALPLASHIIFSEQGLSDYAGACDAAALSDVAHELGVWVAVTRGARPVLCHDGVTLTQVLPCKVDAVDTLGAGDV WHGAFTLALARGETAVAAAKFGNAAAAAKVTMPGGRMPDQTDVAAFLDC >Mature_288_residues PHILCAGLITVDFTFETDGFPVEGNKHQARMSRMMPGGGALLAASAIAKLGGRVDLKGCVGDDALGAHVRETLCARGIGT DHLQTIAGTGTARSAVIVSDAGERTIINHRAQALFPETPDIQFDHDAALVDTRWPGAAVRILRAARMAGKLGVIDAESPV RLCHEALPLASHIIFSEQGLSDYAGACDAAALSDVAHELGVWVAVTRGARPVLCHDGVTLTQVLPCKVDAVDTLGAGDVW HGAFTLALARGETAVAAAKFGNAAAAAKVTMPGGRMPDQTDVAAFLDC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Escherichia coli, GI87082343, Length=294, Percent_Identity=34.3537414965986, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1790193, Length=302, Percent_Identity=29.1390728476821, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR002139 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: NA
Molecular weight: Translated: 29916; Mature: 29785
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHILCAGLITVDFTFETDGFPVEGNKHQARMSRMMPGGGALLAASAIAKLGGRVDLKGC CCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEC VGDDALGAHVRETLCARGIGTDHLQTIAGTGTARSAVIVSDAGERTIINHRAQALFPETP CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC DIQFDHDAALVDTRWPGAAVRILRAARMAGKLGVIDAESPVRLCHEALPLASHIIFSEQG CCEECCCCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHEECCCC LSDYAGACDAAALSDVAHELGVWVAVTRGARPVLCHDGVTLTQVLPCKVDAVDTLGAGDV CHHHCCCCHHHHHHHHHHHHCEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCH WHGAFTLALARGETAVAAAKFGNAAAAAKVTMPGGRMPDQTDVAAFLDC HHCEEEEEEECCCCEEEHHHCCCCHHEEEEECCCCCCCCCCCHHHEECC >Mature Secondary Structure PHILCAGLITVDFTFETDGFPVEGNKHQARMSRMMPGGGALLAASAIAKLGGRVDLKGC CCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEC VGDDALGAHVRETLCARGIGTDHLQTIAGTGTARSAVIVSDAGERTIINHRAQALFPETP CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC DIQFDHDAALVDTRWPGAAVRILRAARMAGKLGVIDAESPVRLCHEALPLASHIIFSEQG CCEECCCCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHEECCCC LSDYAGACDAAALSDVAHELGVWVAVTRGARPVLCHDGVTLTQVLPCKVDAVDTLGAGDV CHHHCCCCHHHHHHHHHHHHCEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCH WHGAFTLALARGETAVAAAKFGNAAAAAKVTMPGGRMPDQTDVAAFLDC HHCEEEEEEECCCCEEEHHHCCCCHHEEEEECCCCCCCCCCCHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Phosphotransferases with an alcohol group as acceptor [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8346018; 9278503 [H]