Click here to switch to the map view.

The map label for this gene is ybeB [C]

Identifier: 110677999

GI number: 110677999

Start: 602813

End: 603181

Strand: Direct

Name: ybeB [C]

Synonym: RD1_0620

Alternate gene names: 110677999

Gene position: 602813-603181 (Clockwise)

Preceding gene: 110677998

Following gene: 110678000

Centisome position: 14.59

GC content: 54.47

Gene sequence:

>369_bases
ATGTCTGCGGCAACCGACAATGCCACGAGCGAAAAACTTCTGGCGACAATCCTGACTTCCCTGAATGACGACAAGGCCGA
AGATATCGTTCAGATTGATCTGCGCGGTAAGACGGAAATTGGCGACTACATGGTGATTTGTTCAGGCCGGTCGACCCGTC
AGGTCGCCTCGATTTCCGAAAAGCTCGTGCAGACGATAAAGGATGATTTCGGGCGTGTCTCCAAGATCGAAGGCAAGGAA
ACCGGTGACTGGGTGCTGATCGACACGGGCGATGTCATCGTGCATGTCTTTCGTCCCGAAGTCCGGGAATTCTACCAGCT
TGAAAAGATGTGGCAGCCCATGGGCGGCCCCGAAACGGCGGCAAACTGA

Upstream 100 bases:

>100_bases
TACACCCAGCGACCGGGGTCTGGCGGCGCATCTTAAGGAGGACAATGTCCTGTCAATCCATGCTGATGCAGCAAAGGCTG
CGCACACCGAGGCTGCGGTA

Downstream 100 bases:

>100_bases
GCCGACACGGCCTCGATGCGTATCCACATCATTGCGGTCGGGCGCTTGCGTGCCGGGCCTGAGAAAGATCTAATCGGCGA
TTACCTGACGCGTTTTGCGC

Product: iojap-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSAATDNATSEKLLATILTSLNDDKAEDIVQIDLRGKTEIGDYMVICSGRSTRQVASISEKLVQTIKDDFGRVSKIEGKE
TGDWVLIDTGDVIVHVFRPEVREFYQLEKMWQPMGGPETAAN

Sequences:

>Translated_122_residues
MSAATDNATSEKLLATILTSLNDDKAEDIVQIDLRGKTEIGDYMVICSGRSTRQVASISEKLVQTIKDDFGRVSKIEGKE
TGDWVLIDTGDVIVHVFRPEVREFYQLEKMWQPMGGPETAAN
>Mature_121_residues
SAATDNATSEKLLATILTSLNDDKAEDIVQIDLRGKTEIGDYMVICSGRSTRQVASISEKLVQTIKDDFGRVSKIEGKET
GDWVLIDTGDVIVHVFRPEVREFYQLEKMWQPMGGPETAAN

Specific function: Unknown

COG id: COG0799

COG function: function code S; Uncharacterized homolog of plant Iojap protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Iojap family [H]

Homologues:

Organism=Homo sapiens, GI19923977, Length=113, Percent_Identity=34.5132743362832, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081768, Length=95, Percent_Identity=41.0526315789474, Blast_Score=89, Evalue=7e-20,
Organism=Drosophila melanogaster, GI19923046, Length=94, Percent_Identity=32.9787234042553, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004394 [H]

Pfam domain/function: PF02410 DUF143 [H]

EC number: NA

Molecular weight: Translated: 13535; Mature: 13404

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAATDNATSEKLLATILTSLNDDKAEDIVQIDLRGKTEIGDYMVICSGRSTRQVASISE
CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHHHHHH
KLVQTIKDDFGRVSKIEGKETGDWVLIDTGDVIVHVFRPEVREFYQLEKMWQPMGGPETA
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEECHHHHHHHHHHHHHCCCCCCCCC
AN
CC
>Mature Secondary Structure 
SAATDNATSEKLLATILTSLNDDKAEDIVQIDLRGKTEIGDYMVICSGRSTRQVASISE
CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHHHHHH
KLVQTIKDDFGRVSKIEGKETGDWVLIDTGDVIVHVFRPEVREFYQLEKMWQPMGGPETA
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEECHHHHHHHHHHHHHCCCCCCCCC
AN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]