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The map label for this gene is ytfA [H]

Identifier: 110677901

GI number: 110677901

Start: 501353

End: 502024

Strand: Direct

Name: ytfA [H]

Synonym: RD1_0515

Alternate gene names: 110677901

Gene position: 501353-502024 (Clockwise)

Preceding gene: 110677897

Following gene: 110677921

Centisome position: 12.13

GC content: 56.25

Gene sequence:

>672_bases
GTGTTTCGCACAAATGATCAGGGTAGAAGTGAAGTGACCGAGAAGCGCAAAACACGTGACGCAGATGCGACCCGGCTGCG
TATCATGCAGGCTGCCAAGAAGGAATTCGCCAAACATGGTCTGGGCGGGGCCCGCGTGGACGAGATTGCGGAGCGTGCCA
AAGCCAACAAGCGCATGATCTATCACTACTTCGGTTCCAAGGAGAAGCTGTTCAAGGCTGTGCTTGAGGCCGCGTACCTC
GACATCCGGAACGCCGAGCAAAAGCTTGATCTTGACAGCATGCCCGCGGAAAAAGCGTTGGAACACCTCGTGCGGTTCAC
CTGGGATTACTATTTGAAGAACCCGGAGTTCATCACGCTGGTCAACAGCGAGAACCTCCACCGCGCGCGCCACCTCAAGA
AATCCGAAGTGATCGCGGTTGCCAGTCGGAAATTCGTATCCATGATGCAAAACCTGCTGGATCGTGGTGTGCAGGAAGGC
GTCTTTCGCCCGGGCATTGATGCTACACAGTTGAACATCACGATTGCGGCGATTGGCTATTACTACCTGACCAACCGGTT
CACCGGCGCGATCGTGTTCGAGCGGGATCTGATGACGCCTGACGCATTGGAAGAGCGGCTCGCCTTTAACCTCGACACCA
TCATGCGGCTGGTGCGGGCGGACGGTCTTTAG

Upstream 100 bases:

>100_bases
CTCTTCATGCAATAAGCACATAAAGATACCGCCGTGGCAACGCGACGCGAAACAACCTCTGGCCTTTGACGCTCAAAACA
GGATGTCATAGGGTAATCCT

Downstream 100 bases:

>100_bases
AGCGTCATGCGAAAAACCTCGATCACGTAACGCTGCCTGAAATCAAAGTTCAACTTGTTACGTGATACGTGATGGTTCAG
GTATTTCGTCAGACGCTCCA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MFRTNDQGRSEVTEKRKTRDADATRLRIMQAAKKEFAKHGLGGARVDEIAERAKANKRMIYHYFGSKEKLFKAVLEAAYL
DIRNAEQKLDLDSMPAEKALEHLVRFTWDYYLKNPEFITLVNSENLHRARHLKKSEVIAVASRKFVSMMQNLLDRGVQEG
VFRPGIDATQLNITIAAIGYYYLTNRFTGAIVFERDLMTPDALEERLAFNLDTIMRLVRADGL

Sequences:

>Translated_223_residues
MFRTNDQGRSEVTEKRKTRDADATRLRIMQAAKKEFAKHGLGGARVDEIAERAKANKRMIYHYFGSKEKLFKAVLEAAYL
DIRNAEQKLDLDSMPAEKALEHLVRFTWDYYLKNPEFITLVNSENLHRARHLKKSEVIAVASRKFVSMMQNLLDRGVQEG
VFRPGIDATQLNITIAAIGYYYLTNRFTGAIVFERDLMTPDALEERLAFNLDTIMRLVRADGL
>Mature_223_residues
MFRTNDQGRSEVTEKRKTRDADATRLRIMQAAKKEFAKHGLGGARVDEIAERAKANKRMIYHYFGSKEKLFKAVLEAAYL
DIRNAEQKLDLDSMPAEKALEHLVRFTWDYYLKNPEFITLVNSENLHRARHLKKSEVIAVASRKFVSMMQNLLDRGVQEG
VFRPGIDATQLNITIAAIGYYYLTNRFTGAIVFERDLMTPDALEERLAFNLDTIMRLVRADGL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015893
- InterPro:   IPR011075 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25677; Mature: 25677

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRTNDQGRSEVTEKRKTRDADATRLRIMQAAKKEFAKHGLGGARVDEIAERAKANKRMI
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEE
YHYFGSKEKLFKAVLEAAYLDIRNAEQKLDLDSMPAEKALEHLVRFTWDYYLKNPEFITL
EEECCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
VNSENLHRARHLKKSEVIAVASRKFVSMMQNLLDRGVQEGVFRPGIDATQLNITIAAIGY
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHH
YYLTNRFTGAIVFERDLMTPDALEERLAFNLDTIMRLVRADGL
HHHHHCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MFRTNDQGRSEVTEKRKTRDADATRLRIMQAAKKEFAKHGLGGARVDEIAERAKANKRMI
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEE
YHYFGSKEKLFKAVLEAAYLDIRNAEQKLDLDSMPAEKALEHLVRFTWDYYLKNPEFITL
EEECCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
VNSENLHRARHLKKSEVIAVASRKFVSMMQNLLDRGVQEGVFRPGIDATQLNITIAAIGY
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHH
YYLTNRFTGAIVFERDLMTPDALEERLAFNLDTIMRLVRADGL
HHHHHCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]