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The map label for this gene is kdsD [C]

Identifier: 110677767

GI number: 110677767

Start: 361601

End: 362563

Strand: Direct

Name: kdsD [C]

Synonym: RD1_0368

Alternate gene names: 110677767

Gene position: 361601-362563 (Clockwise)

Preceding gene: 110677766

Following gene: 110677768

Centisome position: 8.75

GC content: 61.16

Gene sequence:

>963_bases
ATGAGCGGGATATTTCAAGATACCGCGCGCCGTGTAATCCGGATCGAGATCGACGCCCTGCAACAGCTGGAGCAGAGCAT
CGACGACAGCTTTGCCAAGGCTGTTGAACTGATGATTGCCGCGACCGGGCGCATTATCGTCTGCGGCATGGGAAAATCGG
GCCATATCGCGCGCAAGATCGCCGCGACCTTGGCCAGCACCGGCACACCTGCGCATTTCGTACACCCGGCCGAAGCCAGC
CATGGCGATCTTGGGATGATGGGGGCCGGCGATGTGGTGATCGTCCTGTCCAACTCCGGCGAAACCCCGGAACTGGCCGA
TGTCATTGCATATACGCGCCGCTTTTCCATTCCGATGATCGGGGTGGCAAGCCGCCCTGAGTCCACGCTGCTGCGGCAGT
CTGATGTGGCCCTGGTTCTGCCGCGCGCGCAGGAGGCCTGTGGCACGGGCATCGTTCCGACCTCATCGACAACCATGACG
CTGGCGCTCGGCGATGCGCTGGCCGTCGCCTTGATGGAACACCGTAAATTCACGCCAGAACACTTCCGCGCGTTTCATCC
TGGCGGAAAACTTGGCGCCCAGTTGAGCAAGGTCTCGGACCTCATGCACACGGGGCGCGCTGTCCCGGTCGTGCCGGGCG
ACGCCCCAATGTCCGAAGCACTGCGCGAAATCGGCCAGAAAGGATTTGGAGTCGTCGCGGTATCTGACCCGCAAGGGCTG
TTGCAAGGGATCATCACAAACGGGGACATCAGCCGACATATGGACGGCTTGGCCTCCTTTGAGGCGCATAACGTCATGAC
ACCATCACCCGTGACGATCCCGCCTGATGCCTTGGCCGAACAGGCAGTCGGCATCATGAATGACAAGAAGATCACCTGCC
TGCTGGTCGTCGATCCGCAGGAACCCCGGAAACTGGTCGGGCTGATCCATATCCACGACTGCCTGCGTATTGGCCTGGGG
TGA

Upstream 100 bases:

>100_bases
AGGGCCGCATGGAAACAGCGCAGGCCTGTTTTGACTTTCTGCCGATGCGCGCGAAACTGGACTTGATGGGGTGGCCTGAC
ACGGACATTTTTGCGCACTC

Downstream 100 bases:

>100_bases
TCTTGATGCATGCTGATCGCTACTCTCGAATGGTGGCATGGTTGAAGGTGACCCTGCCTCTCGTAGCGCTTGGTATGTTG
TCGACGCTCTTTCTGATTTC

Product: arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MSGIFQDTARRVIRIEIDALQQLEQSIDDSFAKAVELMIAATGRIIVCGMGKSGHIARKIAATLASTGTPAHFVHPAEAS
HGDLGMMGAGDVVIVLSNSGETPELADVIAYTRRFSIPMIGVASRPESTLLRQSDVALVLPRAQEACGTGIVPTSSTTMT
LALGDALAVALMEHRKFTPEHFRAFHPGGKLGAQLSKVSDLMHTGRAVPVVPGDAPMSEALREIGQKGFGVVAVSDPQGL
LQGIITNGDISRHMDGLASFEAHNVMTPSPVTIPPDALAEQAVGIMNDKKITCLLVVDPQEPRKLVGLIHIHDCLRIGLG

Sequences:

>Translated_320_residues
MSGIFQDTARRVIRIEIDALQQLEQSIDDSFAKAVELMIAATGRIIVCGMGKSGHIARKIAATLASTGTPAHFVHPAEAS
HGDLGMMGAGDVVIVLSNSGETPELADVIAYTRRFSIPMIGVASRPESTLLRQSDVALVLPRAQEACGTGIVPTSSTTMT
LALGDALAVALMEHRKFTPEHFRAFHPGGKLGAQLSKVSDLMHTGRAVPVVPGDAPMSEALREIGQKGFGVVAVSDPQGL
LQGIITNGDISRHMDGLASFEAHNVMTPSPVTIPPDALAEQAVGIMNDKKITCLLVVDPQEPRKLVGLIHIHDCLRIGLG
>Mature_319_residues
SGIFQDTARRVIRIEIDALQQLEQSIDDSFAKAVELMIAATGRIIVCGMGKSGHIARKIAATLASTGTPAHFVHPAEASH
GDLGMMGAGDVVIVLSNSGETPELADVIAYTRRFSIPMIGVASRPESTLLRQSDVALVLPRAQEACGTGIVPTSSTTMTL
ALGDALAVALMEHRKFTPEHFRAFHPGGKLGAQLSKVSDLMHTGRAVPVVPGDAPMSEALREIGQKGFGVVAVSDPQGLL
QGIITNGDISRHMDGLASFEAHNVMTPSPVTIPPDALAEQAVGIMNDKKITCLLVVDPQEPRKLVGLIHIHDCLRIGLG

Specific function: Unknown

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=319, Percent_Identity=45.141065830721, Blast_Score=277, Evalue=6e-76,
Organism=Escherichia coli, GI87082151, Length=322, Percent_Identity=39.7515527950311, Blast_Score=213, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 33749; Mature: 33617

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIFQDTARRVIRIEIDALQQLEQSIDDSFAKAVELMIAATGRIIVCGMGKSGHIARKI
CCCHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
AATLASTGTPAHFVHPAEASHGDLGMMGAGDVVIVLSNSGETPELADVIAYTRRFSIPMI
HHHHHCCCCCCEEECCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE
GVASRPESTLLRQSDVALVLPRAQEACGTGIVPTSSTTMTLALGDALAVALMEHRKFTPE
EECCCCHHHHHHCCCCEEEECCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHH
HFRAFHPGGKLGAQLSKVSDLMHTGRAVPVVPGDAPMSEALREIGQKGFGVVAVSDPQGL
HHHEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHH
LQGIITNGDISRHMDGLASFEAHNVMTPSPVTIPPDALAEQAVGIMNDKKITCLLVVDPQ
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCC
EPRKLVGLIHIHDCLRIGLG
CCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGIFQDTARRVIRIEIDALQQLEQSIDDSFAKAVELMIAATGRIIVCGMGKSGHIARKI
CCHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
AATLASTGTPAHFVHPAEASHGDLGMMGAGDVVIVLSNSGETPELADVIAYTRRFSIPMI
HHHHHCCCCCCEEECCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE
GVASRPESTLLRQSDVALVLPRAQEACGTGIVPTSSTTMTLALGDALAVALMEHRKFTPE
EECCCCHHHHHHCCCCEEEECCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCHH
HFRAFHPGGKLGAQLSKVSDLMHTGRAVPVVPGDAPMSEALREIGQKGFGVVAVSDPQGL
HHHEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHH
LQGIITNGDISRHMDGLASFEAHNVMTPSPVTIPPDALAEQAVGIMNDKKITCLLVVDPQ
HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCC
EPRKLVGLIHIHDCLRIGLG
CCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]