| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is iolE [H]
Identifier: 110677631
GI number: 110677631
Start: 222774
End: 223670
Strand: Direct
Name: iolE [H]
Synonym: RD1_0223
Alternate gene names: 110677631
Gene position: 222774-223670 (Clockwise)
Preceding gene: 110677630
Following gene: 110677632
Centisome position: 5.39
GC content: 59.75
Gene sequence:
>897_bases ATGACCATCAAAATAGGCAATGCCCCCTGTTCATGGGGTGTGGAGTTTGCGGACGACCCGCGCAACCCCGCGTGGCGCGA TGTTCTGCGTGAGAACGCCGAAGCCGGATACAAGGGCATCGAACTTGGTCCTGTGGGCTATGTCCCGGAGGACCCGGCGA TACTGGCAGACGCTTTGGCGGAGTATGATCTGAGCCTGATCGGTGGCGTGGTGTTCCGCCCCTTTCATGACCCGGCGGCC TGGGATGATGTGCTGGATGCCGCGGTGCGCACCTGCAAAGCGCTCAAGGCGCATGGGGCGGAGCATCTGGTTCTGATCGA TTCCACCTCGCCGCGACGGGCTGGCACTGCGGGCCGCGCGAATGATGCCGAACAGATGGACAAGGCGGAATGGAGCGCGT TTCGGGATCGCATCGCCGCCGTCGCGCGCATCGGTGCCGAAGACTACGGGCTGACCGTCGGCATGCATGCGCACGCAGCA GGCTTTCTCGATTTTGAACCCGAACTTGAGCGGCTCATGAACGAGATCGACGAGAACACGCTCAAGATATGTTTTGATAC CGGCCACCATTCCTACGCGGGCTTTGACCCCGTCGCCTTTATGGAAAAACACATCGGCCGCATCAGCTACATGCATTTCA AGGACATCGATCCGGTTGTAAAAGCGGATGTCATCGCCAAGAGCACCGGGTTTTATGACGCCTGCGGGCAGGGTATCTTT TGCAACCTTGGGGACGGGGATGTGGATTTCCCAAGGGTGCGCGAAATCCTGCTGGAGAGCGGGTTTGACGGCTGGTGCAC CGTCGAACAGGATTGCGACCCGACCTTGCCCGATACGGATTCGCTGCGGGATGCCAAGCTGAACCGGGCCTATCTCGAAA CCATCGGTTTTAGCTGA
Upstream 100 bases:
>100_bases CGGGCTTGAGGTTTCCAATATCGTAGAGGCGGCGCGCCGATCTCATGCGGCGCGCGCATGGCAAGATGTCAACCACGGCT AACCCGAAGGGAGCAGACAA
Downstream 100 bases:
>100_bases GAAAGAAGCGGATATGACACGATTGAACTGGGGTATGATCGGCGGCGGCGAAGGCAGCCAGATTGGCCCCGCGCACCGTC TCGGCGCGCAGGCTGATGGC
Product: hypothetical protein
Products: NA
Alternate protein names: 2-keto-myo-inositol dehydratase; 2KMI dehydratase [H]
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MTIKIGNAPCSWGVEFADDPRNPAWRDVLRENAEAGYKGIELGPVGYVPEDPAILADALAEYDLSLIGGVVFRPFHDPAA WDDVLDAAVRTCKALKAHGAEHLVLIDSTSPRRAGTAGRANDAEQMDKAEWSAFRDRIAAVARIGAEDYGLTVGMHAHAA GFLDFEPELERLMNEIDENTLKICFDTGHHSYAGFDPVAFMEKHIGRISYMHFKDIDPVVKADVIAKSTGFYDACGQGIF CNLGDGDVDFPRVREILLESGFDGWCTVEQDCDPTLPDTDSLRDAKLNRAYLETIGFS
Sequences:
>Translated_298_residues MTIKIGNAPCSWGVEFADDPRNPAWRDVLRENAEAGYKGIELGPVGYVPEDPAILADALAEYDLSLIGGVVFRPFHDPAA WDDVLDAAVRTCKALKAHGAEHLVLIDSTSPRRAGTAGRANDAEQMDKAEWSAFRDRIAAVARIGAEDYGLTVGMHAHAA GFLDFEPELERLMNEIDENTLKICFDTGHHSYAGFDPVAFMEKHIGRISYMHFKDIDPVVKADVIAKSTGFYDACGQGIF CNLGDGDVDFPRVREILLESGFDGWCTVEQDCDPTLPDTDSLRDAKLNRAYLETIGFS >Mature_297_residues TIKIGNAPCSWGVEFADDPRNPAWRDVLRENAEAGYKGIELGPVGYVPEDPAILADALAEYDLSLIGGVVFRPFHDPAAW DDVLDAAVRTCKALKAHGAEHLVLIDSTSPRRAGTAGRANDAEQMDKAEWSAFRDRIAAVARIGAEDYGLTVGMHAHAAG FLDFEPELERLMNEIDENTLKICFDTGHHSYAGFDPVAFMEKHIGRISYMHFKDIDPVVKADVIAKSTGFYDACGQGIFC NLGDGDVDFPRVREILLESGFDGWCTVEQDCDPTLPDTDSLRDAKLNRAYLETIGFS
Specific function: Catalyzes the dehydration of inosose (2-keto-myo- inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D- (3,5/4)-trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi- inositol) [H]
COG id: COG1082
COG function: function code G; Sugar phosphate isomerases/epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iolE/mocC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013022 - InterPro: IPR012307 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =4.2.1.44 [H]
Molecular weight: Translated: 32701; Mature: 32570
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKIGNAPCSWGVEFADDPRNPAWRDVLRENAEAGYKGIELGPVGYVPEDPAILADALA CEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHH EYDLSLIGGVVFRPFHDPAAWDDVLDAAVRTCKALKAHGAEHLVLIDSTSPRRAGTAGRA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC NDAEQMDKAEWSAFRDRIAAVARIGAEDYGLTVGMHAHAAGFLDFEPELERLMNEIDENT CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHCCCE LKICFDTGHHSYAGFDPVAFMEKHIGRISYMHFKDIDPVVKADVIAKSTGFYDACGQGIF EEEEEECCCCCCCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCHHHCCCCEE CNLGDGDVDFPRVREILLESGFDGWCTVEQDCDPTLPDTDSLRDAKLNRAYLETIGFS EECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure TIKIGNAPCSWGVEFADDPRNPAWRDVLRENAEAGYKGIELGPVGYVPEDPAILADALA EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHH EYDLSLIGGVVFRPFHDPAAWDDVLDAAVRTCKALKAHGAEHLVLIDSTSPRRAGTAGRA HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC NDAEQMDKAEWSAFRDRIAAVARIGAEDYGLTVGMHAHAAGFLDFEPELERLMNEIDENT CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHCCCE LKICFDTGHHSYAGFDPVAFMEKHIGRISYMHFKDIDPVVKADVIAKSTGFYDACGQGIF EEEEEECCCCCCCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCHHHCCCCEE CNLGDGDVDFPRVREILLESGFDGWCTVEQDCDPTLPDTDSLRDAKLNRAYLETIGFS EECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA