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The map label for this gene is 110677624

Identifier: 110677624

GI number: 110677624

Start: 214501

End: 215940

Strand: Direct

Name: 110677624

Synonym: RD1_0216

Alternate gene names: NA

Gene position: 214501-215940 (Clockwise)

Preceding gene: 110677623

Following gene: 110677630

Centisome position: 5.19

GC content: 61.6

Gene sequence:

>1440_bases
GTGCCCCACGTCAGCTTGCCGCGCATAGGCACCGCAGAGGCATGGCGTGATGCCGCACGCGGATTTCTTAGCGCTGCTGT
CCCGCCCGCGCAGATCACGTGGGGCGACAGCACAACCGAACCGGGTCTTTTCGAAACGCCTGCGCCACTCGTCGCGCCGG
GCAGGGTGACTGTGCCGCGGTCTTTCGTGTCGATGGCCAACACCGTTGTCTGGCATAGTGATCCATCCCGCTTTGCCCGA
CTCTACGCGTTTTTGTGGCGGTTGAAAGACGCACCGCACCTGATGACGGACCGGGGTGACGCGCAGCTTGCCAAACTGCG
GAGCATGGAAAAAAACGTGCGTCGGTGTCAGCACAAGATGAAAGCCTTTGTTCGGTTTCGCGAAATCGGCGCGCCCGGCG
ATAACAGGCGGTCCTTTGCCGCATGGTTTGAGCCGACGCACCATACCATCGAACCCACCGCGCAGTTTTTCGTCCGCCGA
TTTGCGGATATGGACTGGCGTATCCTGACGCCGGATGTTTCGGTCTTTTTCGAGAACGGGGCGCTGCGGTTTTTGGAAGA
TCACCCGAAACCAGACCTCCCCGAGGATGCCAGCGAAACGCTATGGGTCACTTATTTCCGCAATATCTTTAACCCTGCCC
GGCTCAAGGTGCAGGCGATGCAGTCTGAAATGCCCAAGAAGTACTGGAAAAACATGCCTGAGGCGGCGGCAATTCCGGAT
CTGATCGCCTCTGCCCCCGAACGGGCGCGCCAAATGGCACTGGCCGCGCCCACTCTGCCGCCCACGCGCATCAGCGCCAT
TCAGGCACAACAAGCGGCCCATGAAAGTGTATGGGACGGCCCGCCGGGATCGCTCCCGAAGGCCATCGCCGGATGCACGC
GCTGCCCGTTGCACAAGACGGCAACGCAAGCGGTTCCGGGGGAGGGACCGTTGGATGCAAGGCTGATGATTGTCGGCGAG
CAGCCGGGCGATCAGGAGGATCTGATCGGGCGGCCTTTTGTCGGGCCTGCGGGTCAGCTTTTTGACAGCATTGCGGCGGA
TGCCGGGCTGGACAGGGGGAAGGTGTTCATCACCAATGCCGTGAAGCATTTCAAATTCACACCGCGCGGGCGCAAACGTA
TCCACCAGCGCCCCAATCAGGGTGAAGTGGCCCATTGCAAGTGGTGGCTGGACGCTGAATTGCGCGAGGTTGCGCCCGAT
CTGGTTGTGGCCATGGGTGCAACTGCAGCCGCTGCGTTGACCGGTTCGGGCAAGGCGATTTCAGCGCGGCGCGGCAGGAT
TGAAACGGGCGAGGCAGGGATACCGGTGCTGATCACCTGGCATCCGTCATATCTGTTGCGCCTGCGCGATGACACCCAGC
GCATGGCGGCAACGCAGGAACTGGCGTGCGATCTGCGCATGGCACTAGAGTACAAAGGCAAAGCCCTCGCCGCGCGTTAA

Upstream 100 bases:

>100_bases
TTCATCACGGCTCTCGGGTGGACGCCGCGCAACCTCACCGACAGTGACACGCTGCGCGCCCGCTTTGCGCCGCCGCCGCA
ACAGATGAGCCTTTTCTGAC

Downstream 100 bases:

>100_bases
TCCCTTGTCGATCAGCCGCGGAAATTCCAGCAACCTGCGTTATGACATGGCGAGTTTGACAGGCTTGCCCGTTGCAAGCG
ATTCTGCTGCCGCGTCTGCC

Product: uracil-DNA glycosylase, putative

Products: diphosphate; DNAn+1

Alternate protein names: Uracil-DNA Glycosylase; DNA Polymerase Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Uracil DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase Bacteriophage-Type; DNA Polymerase-Related Protein Bacteriophage-Type; DNA-Directed DNA Polymerase Protein; DNA Polymerase; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein; Uracil DNA Glycosylase; Phage DNA Polymerase; Helicase/Glycosylase; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Glycosylase; Uracil DNA Glycosylase Protein; Uracil-DNA Glycosylase Family 4 Protein; Bacteriophage-Type DNA Polymerase; DNA-Directed DNA Polymerase Bacteriophage-Type; Uracil DNA Glycosylase Superfamily; Uracil-DNA Glycosylase Phage-Related Protein; Phage Spo1 DNA Polymerase-Related Protein; C-Terminal Part Of DNA Polymerase Bacteriophage-Type; Phage SPO1 DNA Polymerase; Uracil-DNA Glycosylase-Like Protein; Uracil DNA Glycosylase Family Protein; Transcriptional Regulator Fis Family; Uracil-DNA Glycosylase-Related Protein; Fis Family Transcriptional Regulator; DNA Polymerase-Like Protein; Leucyl-TRNA Synthetase

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MPHVSLPRIGTAEAWRDAARGFLSAAVPPAQITWGDSTTEPGLFETPAPLVAPGRVTVPRSFVSMANTVVWHSDPSRFAR
LYAFLWRLKDAPHLMTDRGDAQLAKLRSMEKNVRRCQHKMKAFVRFREIGAPGDNRRSFAAWFEPTHHTIEPTAQFFVRR
FADMDWRILTPDVSVFFENGALRFLEDHPKPDLPEDASETLWVTYFRNIFNPARLKVQAMQSEMPKKYWKNMPEAAAIPD
LIASAPERARQMALAAPTLPPTRISAIQAQQAAHESVWDGPPGSLPKAIAGCTRCPLHKTATQAVPGEGPLDARLMIVGE
QPGDQEDLIGRPFVGPAGQLFDSIAADAGLDRGKVFITNAVKHFKFTPRGRKRIHQRPNQGEVAHCKWWLDAELREVAPD
LVVAMGATAAAALTGSGKAISARRGRIETGEAGIPVLITWHPSYLLRLRDDTQRMAATQELACDLRMALEYKGKALAAR

Sequences:

>Translated_479_residues
MPHVSLPRIGTAEAWRDAARGFLSAAVPPAQITWGDSTTEPGLFETPAPLVAPGRVTVPRSFVSMANTVVWHSDPSRFAR
LYAFLWRLKDAPHLMTDRGDAQLAKLRSMEKNVRRCQHKMKAFVRFREIGAPGDNRRSFAAWFEPTHHTIEPTAQFFVRR
FADMDWRILTPDVSVFFENGALRFLEDHPKPDLPEDASETLWVTYFRNIFNPARLKVQAMQSEMPKKYWKNMPEAAAIPD
LIASAPERARQMALAAPTLPPTRISAIQAQQAAHESVWDGPPGSLPKAIAGCTRCPLHKTATQAVPGEGPLDARLMIVGE
QPGDQEDLIGRPFVGPAGQLFDSIAADAGLDRGKVFITNAVKHFKFTPRGRKRIHQRPNQGEVAHCKWWLDAELREVAPD
LVVAMGATAAAALTGSGKAISARRGRIETGEAGIPVLITWHPSYLLRLRDDTQRMAATQELACDLRMALEYKGKALAAR
>Mature_478_residues
PHVSLPRIGTAEAWRDAARGFLSAAVPPAQITWGDSTTEPGLFETPAPLVAPGRVTVPRSFVSMANTVVWHSDPSRFARL
YAFLWRLKDAPHLMTDRGDAQLAKLRSMEKNVRRCQHKMKAFVRFREIGAPGDNRRSFAAWFEPTHHTIEPTAQFFVRRF
ADMDWRILTPDVSVFFENGALRFLEDHPKPDLPEDASETLWVTYFRNIFNPARLKVQAMQSEMPKKYWKNMPEAAAIPDL
IASAPERARQMALAAPTLPPTRISAIQAQQAAHESVWDGPPGSLPKAIAGCTRCPLHKTATQAVPGEGPLDARLMIVGEQ
PGDQEDLIGRPFVGPAGQLFDSIAADAGLDRGKVFITNAVKHFKFTPRGRKRIHQRPNQGEVAHCKWWLDAELREVAPDL
VVAMGATAAAALTGSGKAISARRGRIETGEAGIPVLITWHPSYLLRLRDDTQRMAATQELACDLRMALEYKGKALAAR

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 53089; Mature: 52958

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHVSLPRIGTAEAWRDAARGFLSAAVPPAQITWGDSTTEPGLFETPAPLVAPGRVTVPR
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCH
SFVSMANTVVWHSDPSRFARLYAFLWRLKDAPHLMTDRGDAQLAKLRSMEKNVRRCQHKM
HHHHHHHEEEECCCHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHH
KAFVRFREIGAPGDNRRSFAAWFEPTHHTIEPTAQFFVRRFADMDWRILTPDVSVFFENG
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCEEEEEECC
ALRFLEDHPKPDLPEDASETLWVTYFRNIFNPARLKVQAMQSEMPKKYWKNMPEAAAIPD
CEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHH
LIASAPERARQMALAAPTLPPTRISAIQAQQAAHESVWDGPPGSLPKAIAGCTRCPLHKT
HHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHH
ATQAVPGEGPLDARLMIVGEQPGDQEDLIGRPFVGPAGQLFDSIAADAGLDRGKVFITNA
HHHCCCCCCCCCEEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEH
VKHFKFTPRGRKRIHQRPNQGEVAHCKWWLDAELREVAPDLVVAMGATAAAALTGSGKAI
HHHCCCCCCHHHHHHCCCCCCCEEEEEEEECCHHHHHCHHHHHHHCCHHHHHCCCCCCEE
SARRGRIETGEAGIPVLITWHPSYLLRLRDDTQRMAATQELACDLRMALEYKGKALAAR
ECCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
PHVSLPRIGTAEAWRDAARGFLSAAVPPAQITWGDSTTEPGLFETPAPLVAPGRVTVPR
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCH
SFVSMANTVVWHSDPSRFARLYAFLWRLKDAPHLMTDRGDAQLAKLRSMEKNVRRCQHKM
HHHHHHHEEEECCCHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHH
KAFVRFREIGAPGDNRRSFAAWFEPTHHTIEPTAQFFVRRFADMDWRILTPDVSVFFENG
HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCEEEEEECC
ALRFLEDHPKPDLPEDASETLWVTYFRNIFNPARLKVQAMQSEMPKKYWKNMPEAAAIPD
CEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHH
LIASAPERARQMALAAPTLPPTRISAIQAQQAAHESVWDGPPGSLPKAIAGCTRCPLHKT
HHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHH
ATQAVPGEGPLDARLMIVGEQPGDQEDLIGRPFVGPAGQLFDSIAADAGLDRGKVFITNA
HHHCCCCCCCCCEEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEH
VKHFKFTPRGRKRIHQRPNQGEVAHCKWWLDAELREVAPDLVVAMGATAAAALTGSGKAI
HHHCCCCCCHHHHHHCCCCCCCEEEEEEEECCHHHHHCHHHHHHHCCHHHHHCCCCCCEE
SARRGRIETGEAGIPVLITWHPSYLLRLRDDTQRMAATQELACDLRMALEYKGKALAAR
ECCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA