Click here to switch to the map view.

The map label for this gene is 110677623

Identifier: 110677623

GI number: 110677623

Start: 213264

End: 214499

Strand: Direct

Name: 110677623

Synonym: RD1_0215

Alternate gene names: NA

Gene position: 213264-214499 (Clockwise)

Preceding gene: 110677620

Following gene: 110677624

Centisome position: 5.16

GC content: 58.25

Gene sequence:

>1236_bases
ATGGCGAGATTATCACTGGAACAAAAGCTGGCGATTCTCAGCGACGCGGCAAAATATGACGCGTCCTGCGCGTCATCTGG
CTCGACCAAACGGGATTCGCGCGGCGGCAAGAGCCTCGGGTCGAATGAAGGCAGCGGTATCTGCCATGCCTATGCGCCGG
ATGGGCGATGCATCAGCCTGTTGAAAATACTGATGACCAATTTCTGCATCTATGACTGCACCTATTGCATCAATCGCGCC
TCATCCAATGTCGCGCGCGCGCGGTTTTCTGTGGATGAGGTGGTGAAACTGACGATCGAATTCTACCGCCGCAACTATAT
TGAGGGGCTGTTTCTGTCTTCGGGGATCATCCGGTCGCCCGACGCGACGATGTCGGACATGGTGCAAATCGCGCGCAAAC
TGCGCAAGGAAGAGAATTTTCGTGGCTACATCCACCTCAAGACGATCCCCGACGCCGCTCCTGAACTGATCGAGGAGGCC
GGCCTGCTGGCGGATCGCTTGTCGATCAATGTTGAAATGCCGACCGATGCAGCCGTCAAACAACATGCGCCTGAGAAAAG
CCCCGAGCAGATCCGGCGCGCCATGGCAGATGTGCGCCTACGCAAAGAGGTCGCAAAGGATCGCACGCATACGGGCCGCC
GTCCCCCTCGCTTTGCGCCTGCTGGCCAGTCAACGCAGATGATTATCGGCGCGGATGATGCAACCGACAGCACCGTTTTG
GGACAATCAACGCGGCTCTATTCGAGCTACAAGTTGAAACGCGTCTACTATTCCGCCTTTTCACCCATCCCGGATGCATC
GGCTAAGTTGCCGCTGATCAGCCCGCCGTTGCAGCGTGAACACAGGCTGTATCAGGCGGATTGGTTGTTGCGGTTTTATG
GGTTCGATCTGGAGGAGATTACCGGGCATCGCAAGGATGGCAATCTGGATCTCGATATTGACCCGAAACTGGCATGGGCG
CTGGCGCACCGTGGGCTGTTTCCACTTGATGTGAATACGGCCAGTCGTGACATGCTGCTGCGCGTCCCCGGTTTCGGGAC
GAAAACCGTTGGCCGCATTCTTTCGACCCGCCGACACCGCACGCTGCGCTACGAAGACCTTGCGCGTATGGGGGCGTCGA
TGAAAAAGGCGCAGCCTTTCATCACGGCTCTCGGGTGGACGCCGCGCAACCTCACCGACAGTGACACGCTGCGCGCCCGC
TTTGCGCCGCCGCCGCAACAGATGAGCCTTTTCTGA

Upstream 100 bases:

>100_bases
GTTTTGTGACACACACGGGTCGTCAGGCTTCGCATTGTCCGTTTGTCGCAGGGGTGAAAACCATATTGCGGGAATGCAAG
GGAGAACATATACAGAACAA

Downstream 100 bases:

>100_bases
CGTGCCCCACGTCAGCTTGCCGCGCATAGGCACCGCAGAGGCATGGCGTGATGCCGCACGCGGATTTCTTAGCGCTGCTG
TCCCGCCCGCGCAGATCACG

Product: hypothetical protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Radical SAM Family Protein; Elongator /MiaB/NifB; Radical Sam Domain Protein; Radical SAM; Radical SAM Superfamily Protein; Biotin Synthase Related Domain-Containing Protein; Biotin Synthase Related Domain Containing Protein; Elongator Protein; Radical SAM Methylase Protein; Helix-Hairpin-Helix Motif; Radical SAM Protein

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MARLSLEQKLAILSDAAKYDASCASSGSTKRDSRGGKSLGSNEGSGICHAYAPDGRCISLLKILMTNFCIYDCTYCINRA
SSNVARARFSVDEVVKLTIEFYRRNYIEGLFLSSGIIRSPDATMSDMVQIARKLRKEENFRGYIHLKTIPDAAPELIEEA
GLLADRLSINVEMPTDAAVKQHAPEKSPEQIRRAMADVRLRKEVAKDRTHTGRRPPRFAPAGQSTQMIIGADDATDSTVL
GQSTRLYSSYKLKRVYYSAFSPIPDASAKLPLISPPLQREHRLYQADWLLRFYGFDLEEITGHRKDGNLDLDIDPKLAWA
LAHRGLFPLDVNTASRDMLLRVPGFGTKTVGRILSTRRHRTLRYEDLARMGASMKKAQPFITALGWTPRNLTDSDTLRAR
FAPPPQQMSLF

Sequences:

>Translated_411_residues
MARLSLEQKLAILSDAAKYDASCASSGSTKRDSRGGKSLGSNEGSGICHAYAPDGRCISLLKILMTNFCIYDCTYCINRA
SSNVARARFSVDEVVKLTIEFYRRNYIEGLFLSSGIIRSPDATMSDMVQIARKLRKEENFRGYIHLKTIPDAAPELIEEA
GLLADRLSINVEMPTDAAVKQHAPEKSPEQIRRAMADVRLRKEVAKDRTHTGRRPPRFAPAGQSTQMIIGADDATDSTVL
GQSTRLYSSYKLKRVYYSAFSPIPDASAKLPLISPPLQREHRLYQADWLLRFYGFDLEEITGHRKDGNLDLDIDPKLAWA
LAHRGLFPLDVNTASRDMLLRVPGFGTKTVGRILSTRRHRTLRYEDLARMGASMKKAQPFITALGWTPRNLTDSDTLRAR
FAPPPQQMSLF
>Mature_410_residues
ARLSLEQKLAILSDAAKYDASCASSGSTKRDSRGGKSLGSNEGSGICHAYAPDGRCISLLKILMTNFCIYDCTYCINRAS
SNVARARFSVDEVVKLTIEFYRRNYIEGLFLSSGIIRSPDATMSDMVQIARKLRKEENFRGYIHLKTIPDAAPELIEEAG
LLADRLSINVEMPTDAAVKQHAPEKSPEQIRRAMADVRLRKEVAKDRTHTGRRPPRFAPAGQSTQMIIGADDATDSTVLG
QSTRLYSSYKLKRVYYSAFSPIPDASAKLPLISPPLQREHRLYQADWLLRFYGFDLEEITGHRKDGNLDLDIDPKLAWAL
AHRGLFPLDVNTASRDMLLRVPGFGTKTVGRILSTRRHRTLRYEDLARMGASMKKAQPFITALGWTPRNLTDSDTLRARF
APPPQQMSLF

Specific function: Unknown

COG id: COG4277

COG function: function code R; Predicted DNA-binding protein with the Helix-hairpin-helix motif

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46018; Mature: 45887

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLSLEQKLAILSDAAKYDASCASSGSTKRDSRGGKSLGSNEGSGICHAYAPDGRCISL
CCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHH
LKILMTNFCIYDCTYCINRASSNVARARFSVDEVVKLTIEFYRRNYIEGLFLSSGIIRSP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DATMSDMVQIARKLRKEENFRGYIHLKTIPDAAPELIEEAGLLADRLSINVEMPTDAAVK
CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCHHHHHEEEEEECCCCHHHH
QHAPEKSPEQIRRAMADVRLRKEVAKDRTHTGRRPPRFAPAGQSTQMIIGADDATDSTVL
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
GQSTRLYSSYKLKRVYYSAFSPIPDASAKLPLISPPLQREHRLYQADWLLRFYGFDLEEI
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
TGHRKDGNLDLDIDPKLAWALAHRGLFPLDVNTASRDMLLRVPGFGTKTVGRILSTRRHR
CCCCCCCCEEECCCCHHHHHHHHCCCCEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHH
TLRYEDLARMGASMKKAQPFITALGWTPRNLTDSDTLRARFAPPPQQMSLF
CCCHHHHHHHCCHHHHHCCCEEEECCCCCCCCCCCCCEEECCCCCHHCCCC
>Mature Secondary Structure 
ARLSLEQKLAILSDAAKYDASCASSGSTKRDSRGGKSLGSNEGSGICHAYAPDGRCISL
CCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHH
LKILMTNFCIYDCTYCINRASSNVARARFSVDEVVKLTIEFYRRNYIEGLFLSSGIIRSP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DATMSDMVQIARKLRKEENFRGYIHLKTIPDAAPELIEEAGLLADRLSINVEMPTDAAVK
CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCHHHHHEEEEEECCCCHHHH
QHAPEKSPEQIRRAMADVRLRKEVAKDRTHTGRRPPRFAPAGQSTQMIIGADDATDSTVL
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
GQSTRLYSSYKLKRVYYSAFSPIPDASAKLPLISPPLQREHRLYQADWLLRFYGFDLEEI
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
TGHRKDGNLDLDIDPKLAWALAHRGLFPLDVNTASRDMLLRVPGFGTKTVGRILSTRRHR
CCCCCCCCEEECCCCHHHHHHHHCCCCEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHH
TLRYEDLARMGASMKKAQPFITALGWTPRNLTDSDTLRARFAPPPQQMSLF
CCCHHHHHHHCCHHHHHCCCEEEECCCCCCCCCCCCCEEECCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA