| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yeaS [C]
Identifier: 110677619
GI number: 110677619
Start: 208737
End: 209357
Strand: Direct
Name: yeaS [C]
Synonym: RD1_0211
Alternate gene names: 110677619
Gene position: 208737-209357 (Clockwise)
Preceding gene: 110677618
Following gene: 110677620
Centisome position: 5.05
GC content: 59.58
Gene sequence:
>621_bases ATGACAATCTCCACCGCCGACCTGTTGCTTTACGCGGGTGCATTGATCATCTTGTTTCTGACACCGGGGCCGGTCTGGCT GGCACTGATGGCGCGTGCGCTGTCGGGTGGGTTTGCGGCTGCCTGGCCACTGGCGTTCGGTGTGGCCGTGGGTGACATCC TTTGGCCCTTGGTTGCGGTGCTGGGGATATCGTGGATCGTCTCTGTGTTTGATGTCTTCATGCTCGTGCTGCGCTGGGTG GCTTGCGGCGTGTTCATCGTGATGGGCATCGCGCTGATCCGGCATGCGCGGCACTCCATCAGTGCTGACAGCCGGTTGAC CAGACCCGGCGTTTCGGCAGGCTTTGCCGCGGGGGTCATTGCGATCCTCGGCAATCCCAAGGCGGTCTTGTTCTATATGG GCGTGCTGCCCGGGTTTTTTGATCTGCGCGATGTAACGGGTGTTGATGTCACCGTGATCATCGCGGCTTCCGTGTGTATT CCGCTGATCGGCAATCTGATGATAGCGGCCTGCGTCGGGCGCATCCGCAGCGTTATCACGCGGCCCCAGACGCTGGCACG GATCAATGTCATCTCTGGCTGCTCGCTTATTCTGGTTGGTGTGTTGATCCCTGTATTATAA
Upstream 100 bases:
>100_bases GGATGACGGGCACGGAAAAGAGCCTGTTTGATACGCTGGGCGACGGCGCGCAGTATTTCGAAATCACCGAAACGGACGGT GCATCAACGGTGCAGGACGG
Downstream 100 bases:
>100_bases CACAAAATATTGTGTCGGCGGCGTGACAACCGGAGAGAAAAACCGTATAACTCGGTCAAAATACGAAGGTATGACGACAT GTCCGAAAACGATCAGACTC
Product: amino acid transporter LysE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MTISTADLLLYAGALIILFLTPGPVWLALMARALSGGFAAAWPLAFGVAVGDILWPLVAVLGISWIVSVFDVFMLVLRWV ACGVFIVMGIALIRHARHSISADSRLTRPGVSAGFAAGVIAILGNPKAVLFYMGVLPGFFDLRDVTGVDVTVIIAASVCI PLIGNLMIAACVGRIRSVITRPQTLARINVISGCSLILVGVLIPVL
Sequences:
>Translated_206_residues MTISTADLLLYAGALIILFLTPGPVWLALMARALSGGFAAAWPLAFGVAVGDILWPLVAVLGISWIVSVFDVFMLVLRWV ACGVFIVMGIALIRHARHSISADSRLTRPGVSAGFAAGVIAILGNPKAVLFYMGVLPGFFDLRDVTGVDVTVIIAASVCI PLIGNLMIAACVGRIRSVITRPQTLARINVISGCSLILVGVLIPVL >Mature_205_residues TISTADLLLYAGALIILFLTPGPVWLALMARALSGGFAAAWPLAFGVAVGDILWPLVAVLGISWIVSVFDVFMLVLRWVA CGVFIVMGIALIRHARHSISADSRLTRPGVSAGFAAGVIAILGNPKAVLFYMGVLPGFFDLRDVTGVDVTVIIAASVCIP LIGNLMIAACVGRIRSVITRPQTLARINVISGCSLILVGVLIPVL
Specific function: Unknown
COG id: COG1280
COG function: function code E; Putative threonine efflux protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the rht family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001123 [H]
Pfam domain/function: PF01810 LysE [H]
EC number: NA
Molecular weight: Translated: 21606; Mature: 21474
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISTADLLLYAGALIILFLTPGPVWLALMARALSGGFAAAWPLAFGVAVGDILWPLVAV CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LGISWIVSVFDVFMLVLRWVACGVFIVMGIALIRHARHSISADSRLTRPGVSAGFAAGVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH AILGNPKAVLFYMGVLPGFFDLRDVTGVDVTVIIAASVCIPLIGNLMIAACVGRIRSVIT HHHCCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RPQTLARINVISGCSLILVGVLIPVL CCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TISTADLLLYAGALIILFLTPGPVWLALMARALSGGFAAAWPLAFGVAVGDILWPLVAV CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH LGISWIVSVFDVFMLVLRWVACGVFIVMGIALIRHARHSISADSRLTRPGVSAGFAAGVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH AILGNPKAVLFYMGVLPGFFDLRDVTGVDVTVIIAASVCIPLIGNLMIAACVGRIRSVIT HHHCCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RPQTLARINVISGCSLILVGVLIPVL CCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]