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The map label for this gene is yrdD [H]

Identifier: 108813984

GI number: 108813984

Start: 4376517

End: 4377077

Strand: Reverse

Name: yrdD [H]

Synonym: YPN_3824

Alternate gene names: 108813984

Gene position: 4377077-4376517 (Counterclockwise)

Preceding gene: 108813985

Following gene: 108813983

Centisome position: 96.53

GC content: 46.52

Gene sequence:

>561_bases
ATGGCTTATATAGAAGGCGTTATGACGAAGAAAGTTATTACTAAGGATAATGGATCTTGTCCTGAGTGCGGGTCAGCGTT
GGTGATTCGCAGTGGGGGGCACGGTCCATTCCTTGGTTGTTCACATTATCCAGATTGCCAGTATATACGCCCACTAAAAG
CGCAGGCTGACGGGCATGTTGTGAAAACTCTGGAAGGGCAACCTTGTCCTGAGTGTGGTTCGGATATGATGCTACGCCAA
GGCCGCTTCGGTATGTTTATTGGTTGCAGCCAATATCCACAGTGTGATCATACAGAAGTTATAGATAAACCTGATGAGAC
GTCTATTGATTGCCCACAGTGTGGTCAAGGGAAACTGTTACAACGTAAGTCTCGGTTTGGGAAAGTTTTTCATGCCTGTA
ATCGCTACCCCGACTGTCAATTTACGCTCAACCAACCGCCAATTGCAGGAAAGTGTGGTTATTGCCACTACCCACTGTTA
ATAGAAAAAAGAACGGCACGGGGTATCAAACGTATCTGTGCCAGTAAGTTATGTGGGAAGGCTGTAGCCAGTGAGTCATA
G

Upstream 100 bases:

>100_bases
TTCAATATACCGGGTTATGAAAATGCCTATAAGCAGATGGAAGAGCTGCTCTTTGAAGTCAATGACGGTTATTTGCACTA
GGTGCTAAGATTGCTGGCTA

Downstream 100 bases:

>100_bases
TATGAATCAACAAGAAAATAATTTTGTGCTGGCGGATATAGTGCGGGCATTGCGGCAAGAAGAGGTTATCGCTTATCCGA
CAGAAGCAGTTTTTGGTTTA

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MAYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQPCPECGSDMMLRQ
GRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLL
IEKRTARGIKRICASKLCGKAVASES

Sequences:

>Translated_186_residues
MAYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQPCPECGSDMMLRQ
GRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLL
IEKRTARGIKRICASKLCGKAVASES
>Mature_185_residues
AYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHVVKTLEGQPCPECGSDMMLRQG
RFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLLQRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLI
EKRTARGIKRICASKLCGKAVASES

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=172, Percent_Identity=68.0232558139535, Blast_Score=263, Evalue=5e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20412; Mature: 20281

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
11.3 %Cys+Met (Translated Protein)
8.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
10.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHV
CCCHHHHHHHHHEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE
VKTLEGQPCPECGSDMMLRQGRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLL
EEECCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
QRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLIEKRTARGIKRICASKLCGK
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
AVASES
HHCCCC
>Mature Secondary Structure 
AYIEGVMTKKVITKDNGSCPECGSALVIRSGGHGPFLGCSHYPDCQYIRPLKAQADGHV
CCHHHHHHHHHEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE
VKTLEGQPCPECGSDMMLRQGRFGMFIGCSQYPQCDHTEVIDKPDETSIDCPQCGQGKLL
EEECCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
QRKSRFGKVFHACNRYPDCQFTLNQPPIAGKCGYCHYPLLIEKRTARGIKRICASKLCGK
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
AVASES
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]