Click here to switch to the map view.

The map label for this gene is 108813834

Identifier: 108813834

GI number: 108813834

Start: 4216864

End: 4217427

Strand: Reverse

Name: 108813834

Synonym: YPN_3674

Alternate gene names: NA

Gene position: 4217427-4216864 (Counterclockwise)

Preceding gene: 108813835

Following gene: 108813825

Centisome position: 93.01

GC content: 46.1

Gene sequence:

>564_bases
ATGCAACCTGTAAGCCTTTCTTACAAGTTCGCCAAAGGGACTCGGCAAGTAAATCGAAACACGATGCATTACAGCTTATT
GGTAATACTTGCTGTGGGTTATCGGGTTCGTTCGGTTCGTGAGACTCAGTTCCTCCAGTGGGCTACACAAACTTTGCAGG
AATATCTGATTAAAGGTTTTGTGATGGATGATGAGCGGCTGAAGAACCCGCCTGTTGGCCAGTCTGTAATGCCTGATTAC
TTTGGCGAGATGTTGGAACGTATCCGCGATATCCGTGCTAGTGAGCGACGGGTTTATCTGCGGGTTCGAGAGATCTTTGC
TTTAGCTGCCGACTATGAGCCTTCATTGCAAGAGACGACCCGTTTTTTCCACGTTATTCAGAACAAATTACACTTTGCCT
GTACCGGGCAAACAGCCGCAGAGCTTATCCACCAACGAGCTGATGCCAACTTACCGAATATGGGGCTGACCAGTTTTAAA
GGTAATGCAGTCCGTAAAAGTGATGTAATCATTGCGAAGAACTATTTAAGTCAAAGTGAAGTTGATGACAGGCAAACACC
TTAG

Upstream 100 bases:

>100_bases
TAATTAACGAACTTTCAGGAGTTTAGTGCCTGAATAAAGGCGAATAAGCGCCGAGGGAGATAGAGAAAACTTACCTTAGA
TACCTACCGGCGAGCTTAAA

Downstream 100 bases:

>100_bases
CGATAATAAACCGCGATATGCTGGCCTTGTACTTTTTCTATGCTTATTTTTATATCAAAAATTTCTTCGAGGATCGAAGG
CTGCATAATTTCTGCTGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MQPVSLSYKFAKGTRQVNRNTMHYSLLVILAVGYRVRSVRETQFLQWATQTLQEYLIKGFVMDDERLKNPPVGQSVMPDY
FGEMLERIRDIRASERRVYLRVREIFALAADYEPSLQETTRFFHVIQNKLHFACTGQTAAELIHQRADANLPNMGLTSFK
GNAVRKSDVIIAKNYLSQSEVDDRQTP

Sequences:

>Translated_187_residues
MQPVSLSYKFAKGTRQVNRNTMHYSLLVILAVGYRVRSVRETQFLQWATQTLQEYLIKGFVMDDERLKNPPVGQSVMPDY
FGEMLERIRDIRASERRVYLRVREIFALAADYEPSLQETTRFFHVIQNKLHFACTGQTAAELIHQRADANLPNMGLTSFK
GNAVRKSDVIIAKNYLSQSEVDDRQTP
>Mature_187_residues
MQPVSLSYKFAKGTRQVNRNTMHYSLLVILAVGYRVRSVRETQFLQWATQTLQEYLIKGFVMDDERLKNPPVGQSVMPDY
FGEMLERIRDIRASERRVYLRVREIFALAADYEPSLQETTRFFHVIQNKLHFACTGQTAAELIHQRADANLPNMGLTSFK
GNAVRKSDVIIAKNYLSQSEVDDRQTP

Specific function: Unknown

COG id: COG3943

COG function: function code R; Virulence protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21619; Mature: 21619

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPVSLSYKFAKGTRQVNRNTMHYSLLVILAVGYRVRSVRETQFLQWATQTLQEYLIKGF
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VMDDERLKNPPVGQSVMPDYFGEMLERIRDIRASERRVYLRVREIFALAADYEPSLQETT
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
RFFHVIQNKLHFACTGQTAAELIHQRADANLPNMGLTSFKGNAVRKSDVIIAKNYLSQSE
HHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCHHC
VDDRQTP
CCCCCCC
>Mature Secondary Structure
MQPVSLSYKFAKGTRQVNRNTMHYSLLVILAVGYRVRSVRETQFLQWATQTLQEYLIKGF
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VMDDERLKNPPVGQSVMPDYFGEMLERIRDIRASERRVYLRVREIFALAADYEPSLQETT
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
RFFHVIQNKLHFACTGQTAAELIHQRADANLPNMGLTSFKGNAVRKSDVIIAKNYLSQSE
HHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCHHC
VDDRQTP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA