| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108813788
Identifier: 108813788
GI number: 108813788
Start: 4156147
End: 4156389
Strand: Reverse
Name: 108813788
Synonym: YPN_3628
Alternate gene names: NA
Gene position: 4156389-4156147 (Counterclockwise)
Preceding gene: 108813791
Following gene: 108813783
Centisome position: 91.66
GC content: 45.68
Gene sequence:
>243_bases ATGCGCCCAGAGCAGAAACTGTGGTCATATATGACTCCCGCTTTCATTATTCTATTTTGGCCGCTTGGGGAAGATCTGTG CGGCAGTAGGGTACGTCGCGATCAAGAACAACGTCGCCATTATGGTGGGCGGGAGAAAAATAGCTTGAGTGAAACCGCCA GAAAATGGACGGCTAAAACGGCTGATTTTTGGAGGATGCTACAAATTATCTCTCTATTTTCATGCCAATATAGAGCTGAA TAA
Upstream 100 bases:
>100_bases GCACCGCCGACTAAGCCGCCCGCTAACGCTCCCGCGATCATGCCGTAAGCAGGCGGCACTTTGCGTAAAATTAGGACGAT GGACACGATCAGTGCCACCA
Downstream 100 bases:
>100_bases TTGAACTTAATTCATTGATTTTTAAAGCTGTTATAGCTTCAATCTTCTGTAACCGATAGCGTAGGGTATTGACATGGATA TGCAGTTGTTTTGACGTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 80; Mature: 80
Protein sequence:
>80_residues MRPEQKLWSYMTPAFIILFWPLGEDLCGSRVRRDQEQRRHYGGREKNSLSETARKWTAKTADFWRMLQIISLFSCQYRAE
Sequences:
>Translated_80_residues MRPEQKLWSYMTPAFIILFWPLGEDLCGSRVRRDQEQRRHYGGREKNSLSETARKWTAKTADFWRMLQIISLFSCQYRAE >Mature_80_residues MRPEQKLWSYMTPAFIILFWPLGEDLCGSRVRRDQEQRRHYGGREKNSLSETARKWTAKTADFWRMLQIISLFSCQYRAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9673; Mature: 9673
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPEQKLWSYMTPAFIILFWPLGEDLCGSRVRRDQEQRRHYGGREKNSLSETARKWTAKT CCCHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH ADFWRMLQIISLFSCQYRAE HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRPEQKLWSYMTPAFIILFWPLGEDLCGSRVRRDQEQRRHYGGREKNSLSETARKWTAKT CCCHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH ADFWRMLQIISLFSCQYRAE HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA