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The map label for this gene is mmsR [H]

Identifier: 108813711

GI number: 108813711

Start: 4052227

End: 4053105

Strand: Reverse

Name: mmsR [H]

Synonym: YPN_3551

Alternate gene names: 108813711

Gene position: 4053105-4052227 (Counterclockwise)

Preceding gene: 108813714

Following gene: 108813707

Centisome position: 89.38

GC content: 45.96

Gene sequence:

>879_bases
ATGGAAAAAAACATGCAACGAACGCAGGTCGTGGCGAACTGGTATCGAGAGTCGGATGAGTTTTCGACGTTGGTGAACTA
CCGGATTCTGCGTGCGGGTCATATTCGTGCAGCCGATAATTTTCATGTACGCCGTCAGTCTGTTGCCGGTCACGAATTGA
TTTTTTGTCTCAATGGTAGTGGATTTATCCGCCTGGAAAATAATCTTCATGAAGTTAAAAAGGGTAATCTCGCTTGGTTG
CCTGTCCGTTGGCCCCATGAACATTTTCCAAATAAACAAGAACCCTGGGAGATTTTATGGTTACGCATTGATGGCGCTAA
ACTCAACAATATCATGCAGATCCTTGATGTTGCCCAACAACCGGTTTTTGAATTCACCTCCCCTGAAACCATCACCGATA
TTTATCACCGCCTATTTGATTTAATGCAGAGTCATACCCTCGTGGCGGATGCCCATTGCGATGTGCTGTGTTCCCAACTG
ATATACACCCTGCTGGAGAATCGCAGTTTCGATGCCACGAAATCGCCGGTCATTTCCCATCGTGGGCTGGGTCGGCTGAT
TTATCAGATTCATAGCCATTACAATGATGACTGGGATATTGATAAGTTTATGCAGTATTGCCAAGTGAGTAAGTCGCAAC
TTTTTCGATTATTTCAGGAGACATTTAATCAAAGCCCTTTGAGATGGCTTAAAAATTATCGCCTTTCCCAAGCGCGTCGT
TTATTAGTGGAAACCGAGGAGACCATTAGCCGTATTGCTGGGCTGGTGGGGTATAACGACCCGCTGCATTTTTCCCGTGA
TTTTCATCGGTCAGTCGGTTTATCCCCAAGTGATTTTCGCCGCCAGGAGCGGCAATTGGATAATGACCGTCACGACTGA

Upstream 100 bases:

>100_bases
TCATCAGTATGATGAGGGGGAACCTGTTTTTATCTTCTTGGCATGTCACGATGAACCGGGATATAGCCTGAATTTCTGTC
ATCAACATCGTGTGGGGCGT

Downstream 100 bases:

>100_bases
GCAATTTCCTGGCTGTCGCCACGCACGATAGGATTATGAGAGATGAGCAGCATACGGCCTCCCGTTGTAGGAGCCGTATG
TGTGTTATCAACAGAATATT

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MEKNMQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGSGFIRLENNLHEVKKGNLAWL
PVRWPHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQPVFEFTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQL
IYTLLENRSFDATKSPVISHRGLGRLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARR
LLVETEETISRIAGLVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD

Sequences:

>Translated_292_residues
MEKNMQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGSGFIRLENNLHEVKKGNLAWL
PVRWPHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQPVFEFTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQL
IYTLLENRSFDATKSPVISHRGLGRLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARR
LLVETEETISRIAGLVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD
>Mature_292_residues
MEKNMQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGSGFIRLENNLHEVKKGNLAWL
PVRWPHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQPVFEFTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQL
IYTLLENRSFDATKSPVISHRGLGRLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARR
LLVETEETISRIAGLVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD

Specific function: Regulatory protein for the mmsAB operon. Activates the transcription of the mmsAB genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=265, Percent_Identity=24.9056603773585, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87082197, Length=226, Percent_Identity=24.7787610619469, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34621; Mature: 34621

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNMQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHCCCCEEEEEECCC
GFIRLENNLHEVKKGNLAWLPVRWPHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQ
CEEEECCCHHHHHCCCEEEEEECCCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHC
PVFEFTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQLIYTLLENRSFDATKSPVISH
CHHHCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
RGLGRLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARR
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LLVETEETISRIAGLVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEKNMQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAGHELIFCLNGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHCCCCEEEEEECCC
GFIRLENNLHEVKKGNLAWLPVRWPHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQ
CEEEECCCHHHHHCCCEEEEEECCCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHC
PVFEFTSPETITDIYHRLFDLMQSHTLVADAHCDVLCSQLIYTLLENRSFDATKSPVISH
CHHHCCCCHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
RGLGRLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARR
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LLVETEETISRIAGLVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339433; 10984043 [H]