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The map label for this gene is 108813571

Identifier: 108813571

GI number: 108813571

Start: 3883453

End: 3884667

Strand: Reverse

Name: 108813571

Synonym: YPN_3411

Alternate gene names: NA

Gene position: 3884667-3883453 (Counterclockwise)

Preceding gene: 108813572

Following gene: 108813570

Centisome position: 85.67

GC content: 46.83

Gene sequence:

>1215_bases
ATGACCACCGTATTCAAGCTTCGCCTGTTAAATGGTGATCTCAATGGTCTTGAGCTGATATTACCGGAAGGTGAATTTAC
ACTGGGGGAGCAGGGGTGTGATGTTCTGCTGCCTTTATCTGACGGCAATATAGTGACGCTATGTGTTAATGAATATCAGG
TAATGATACAGGTGGCGGAGGAGGTTTGGATTAATGGTGCACAGCACGATTTACACACTCCCCTTCCACTGTTGCAATCT
ATTGAAATTGCCGGATTGGTATTCGTTCTGGGTGAACAAACGGATATTTTGAGTGGAATTAAAGTCACTCACCGTGCGAG
GTTCCCTTTATTGGTATGGCTAGCTATTGCGATATGTGTCCCCTTATCACTGCTGTTTGTTTTTTTATTTTGGTTAACCA
CTCAGCCTGAGACATTACGTGCTTCGATTCCTGCGGATGTCCCGACGCAATTAGCCGAACGCCTGCGCGAACCCGCTTTA
CAGGGAATAAAGGGAACCTGGCTAGCGGATGGGAGTGTCACATTAAGTGGGCATTGTGCCTCGTCCTCAATGATGGAACC
ACTGCAACATTTTTTACTGCGTAACCATATCGCCTTTCGTAACCAATTGGTGTGTGATGATCGCTTAATCGCTTCCGTTA
GCGATCTATTACATCAGCATGGTTACCACGATATTGAGGTGCGCATCGGTGATGAACCGGGAAATATTGTGATTTATGGT
GCCGTTCAAATGGGTGATCAGTGGTTAACCGTGCAGGACACGCTGGCGGCGGTCTCAGGGTTGAAAGGTTGGCTGGTGGT
TAATGCTCATTCAGGGCAAATACAACAACTGGTGGAGCGCTTGAGAGCGGCAGGCTTATTAGGATTCTTAAGCATGACGG
AAAGTAATAAAGAGTTGGCCATCAGTGGTGTGCTGTCATCTGAACAGCAGCAGCAGTTAAAGGAGACATTGGCCGCTTTA
TCTCAGCAGCAACCCGGTTTTCCGTCAGTCAGGTATCAGAATATTCCGGCGTCAGACCGAACGGATCAATTTCTTCCGGC
AAAGGTCGTGAGCTATGGAGGAAATACCCAGTCGGCATTTGTGCGGTTAGCCAATGGTGGGCGTTTGCAGCAAGGGAGTG
TGTTGGCAAATGGCTATAAAGTGGTTTTTATTGGGGAACAGGGACTGACGTTATTAAAAGCAAATAATTTAGTACATATC
CCCATGGATTTCTAA

Upstream 100 bases:

>100_bases
CCGCTATTAGGTGGGTTGTTCCGTAGTACAGATAAACAATCTCACAGCGTGGTCAGACTCTTCCTGATCAAGGCCGTTCC
GGTTAATGCAGGGGAATAAC

Downstream 100 bases:

>100_bases
GGTTCAGGAGTAACGGAAATGCAGCATATTACTGTGCTGGAGGAGGATATTAAACATGACCCTACAGCGATCAAACAAAG
AAAAGAGATATTGGCGAGAG

Product: type-III secretion protein

Products: NA

Alternate protein names: Type III Secretion Apparatus Protein; Type III Secretion Apparatus Protein YscD/HrpQ Family; YscD/HrpQ Family Type III Secretion Apparatus Protein; Type III Secretion Apparatus; Type III Export Protein PscD; Pathogenicity Island Protein

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTTVFKLRLLNGDLNGLELILPEGEFTLGEQGCDVLLPLSDGNIVTLCVNEYQVMIQVAEEVWINGAQHDLHTPLPLLQS
IEIAGLVFVLGEQTDILSGIKVTHRARFPLLVWLAIAICVPLSLLFVFLFWLTTQPETLRASIPADVPTQLAERLREPAL
QGIKGTWLADGSVTLSGHCASSSMMEPLQHFLLRNHIAFRNQLVCDDRLIASVSDLLHQHGYHDIEVRIGDEPGNIVIYG
AVQMGDQWLTVQDTLAAVSGLKGWLVVNAHSGQIQQLVERLRAAGLLGFLSMTESNKELAISGVLSSEQQQQLKETLAAL
SQQQPGFPSVRYQNIPASDRTDQFLPAKVVSYGGNTQSAFVRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHI
PMDF

Sequences:

>Translated_404_residues
MTTVFKLRLLNGDLNGLELILPEGEFTLGEQGCDVLLPLSDGNIVTLCVNEYQVMIQVAEEVWINGAQHDLHTPLPLLQS
IEIAGLVFVLGEQTDILSGIKVTHRARFPLLVWLAIAICVPLSLLFVFLFWLTTQPETLRASIPADVPTQLAERLREPAL
QGIKGTWLADGSVTLSGHCASSSMMEPLQHFLLRNHIAFRNQLVCDDRLIASVSDLLHQHGYHDIEVRIGDEPGNIVIYG
AVQMGDQWLTVQDTLAAVSGLKGWLVVNAHSGQIQQLVERLRAAGLLGFLSMTESNKELAISGVLSSEQQQQLKETLAAL
SQQQPGFPSVRYQNIPASDRTDQFLPAKVVSYGGNTQSAFVRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHI
PMDF
>Mature_403_residues
TTVFKLRLLNGDLNGLELILPEGEFTLGEQGCDVLLPLSDGNIVTLCVNEYQVMIQVAEEVWINGAQHDLHTPLPLLQSI
EIAGLVFVLGEQTDILSGIKVTHRARFPLLVWLAIAICVPLSLLFVFLFWLTTQPETLRASIPADVPTQLAERLREPALQ
GIKGTWLADGSVTLSGHCASSSMMEPLQHFLLRNHIAFRNQLVCDDRLIASVSDLLHQHGYHDIEVRIGDEPGNIVIYGA
VQMGDQWLTVQDTLAAVSGLKGWLVVNAHSGQIQQLVERLRAAGLLGFLSMTESNKELAISGVLSSEQQQQLKETLAALS
QQQPGFPSVRYQNIPASDRTDQFLPAKVVSYGGNTQSAFVRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHIP
MDF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44224; Mature: 44092

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVFKLRLLNGDLNGLELILPEGEFTLGEQGCDVLLPLSDGNIVTLCVNEYQVMIQVAE
CCEEEEEEEECCCCCCEEEEECCCCEEECCCCCCEEEEECCCCEEEEEECHHHHHHHHHH
EVWINGAQHDLHTPLPLLQSIEIAGLVFVLGEQTDILSGIKVTHRARFPLLVWLAIAICV
HHHCCCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHCCCEEECCCCCHHHHHHHHHHHH
PLSLLFVFLFWLTTQPETLRASIPADVPTQLAERLREPALQGIKGTWLADGSVTLSGHCA
HHHHHHHHHHHHCCCCHHHEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCC
SSSMMEPLQHFLLRNHIAFRNQLVCDDRLIASVSDLLHQHGYHDIEVRIGDEPGNIVIYG
CHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEE
AVQMGDQWLTVQDTLAAVSGLKGWLVVNAHSGQIQQLVERLRAAGLLGFLSMTESNKELA
EEECCCEEEEHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHEECCCCCEEE
ISGVLSSEQQQQLKETLAALSQQQPGFPSVRYQNIPASDRTDQFLPAKVVSYGGNTQSAF
EEEHHCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCCCEEE
VRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHIPMDF
EEECCCCCEECCCEEECCEEEEEECCCCEEEEEECCEEEEECCC
>Mature Secondary Structure 
TTVFKLRLLNGDLNGLELILPEGEFTLGEQGCDVLLPLSDGNIVTLCVNEYQVMIQVAE
CEEEEEEEECCCCCCEEEEECCCCEEECCCCCCEEEEECCCCEEEEEECHHHHHHHHHH
EVWINGAQHDLHTPLPLLQSIEIAGLVFVLGEQTDILSGIKVTHRARFPLLVWLAIAICV
HHHCCCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHCCCEEECCCCCHHHHHHHHHHHH
PLSLLFVFLFWLTTQPETLRASIPADVPTQLAERLREPALQGIKGTWLADGSVTLSGHCA
HHHHHHHHHHHHCCCCHHHEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCC
SSSMMEPLQHFLLRNHIAFRNQLVCDDRLIASVSDLLHQHGYHDIEVRIGDEPGNIVIYG
CHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEE
AVQMGDQWLTVQDTLAAVSGLKGWLVVNAHSGQIQQLVERLRAAGLLGFLSMTESNKELA
EEECCCEEEEHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHEECCCCCEEE
ISGVLSSEQQQQLKETLAALSQQQPGFPSVRYQNIPASDRTDQFLPAKVVSYGGNTQSAF
EEEHHCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCCCEEE
VRLANGGRLQQGSVLANGYKVVFIGEQGLTLLKANNLVHIPMDF
EEECCCCCEECCCEEECCEEEEEECCCCEEEEEECCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA