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The map label for this gene is 108813560

Identifier: 108813560

GI number: 108813560

Start: 3875696

End: 3876097

Strand: Reverse

Name: 108813560

Synonym: YPN_3400

Alternate gene names: NA

Gene position: 3876097-3875696 (Counterclockwise)

Preceding gene: 108813561

Following gene: 108813559

Centisome position: 85.48

GC content: 56.72

Gene sequence:

>402_bases
TTGAATCACTCGCAACAGCGGACGCTACAACGGCTATTGGCGCTACGGCAGCGGCAGGAACGGCGGTTGCGCCAGCAACT
GGGACAACTGCGGCGTGAGCAGCAGCAACAGGAGCAGCAACTGGAGAATGGCCGTCGCCGGCATCAACAACTCTGCCAGC
AACTACAACAGCTTGCGCAGTGGTGCGGAATGCTGACCCCGCGAGAGGCGGATGAACAAAAAGTATTACGGCAGGCGGTG
TATCAGGCGGAACGGCAGGCGAAAAAACAGCTAAACGCATGGGTGGCGCAAGGGCGGCAACAGGTCAGTGCCATTGAGCG
ACAACAAGCGCGGTTACGGCGTAATCAGCGTGAACAGGAAAAATTACGGATGCTGACAGAAGATGAGTCGAATCGATATT
GA

Upstream 100 bases:

>100_bases
CGGCAATATGCGCCTTTTTACAACAAGACCACAGCCTAACGCGTGACCCAGATACTGCTCATCTTGATACCACTCTGGAA
CACCTGGCGCAGGTTGTCGG

Downstream 100 bases:

>100_bases
AGGCGCGTTACCGCCACTAAGAGAACAAGGTTATTCAAAAGAGCGATCAACACATTGGGATCATGAGAGGCAACGTCAGC
AGTTTGCTCGCTGTTTCTCC

Product: type III secretion system apparatus protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQLENGRRRHQQLCQQLQQLAQWCGMLTPREADEQKVLRQAV
YQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQEKLRMLTEDESNRY

Sequences:

>Translated_133_residues
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQLENGRRRHQQLCQQLQQLAQWCGMLTPREADEQKVLRQAV
YQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQEKLRMLTEDESNRY
>Mature_133_residues
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQLENGRRRHQQLCQQLQQLAQWCGMLTPREADEQKVLRQAV
YQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQEKLRMLTEDESNRY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16309; Mature: 16309

Theoretical pI: Translated: 11.87; Mature: 11.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQLENGRRRHQQLCQQLQQLAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WCGMLTPREADEQKVLRQAVYQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQE
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRMLTEDESNRY
HHHHHHHHCCCCC
>Mature Secondary Structure
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQLENGRRRHQQLCQQLQQLAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WCGMLTPREADEQKVLRQAVYQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQE
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRMLTEDESNRY
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA