| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
Click here to switch to the map view.
The map label for this gene is 108813328
Identifier: 108813328
GI number: 108813328
Start: 3568381
End: 3570534
Strand: Reverse
Name: 108813328
Synonym: YPN_3168
Alternate gene names: NA
Gene position: 3570534-3568381 (Counterclockwise)
Preceding gene: 108813329
Following gene: 108813327
Centisome position: 78.74
GC content: 43.36
Gene sequence:
>2154_bases ATGATGCCTGTCAGTTCCCGCAGAGGATATCCTCTTAATACGTCGGATTCATGGCATGGCGGGATACATATACCGCATAC GGACTCAGGCGCATTGCCTGAGAAGGTCAGGGCAATAGCTGACGGTACGGTCGTGTCGTTTCGAATGCCTTCAAAACCCT GGGAAAGAGATCAATTCCCGCTGAAGTATTCGCCTCTCAGAGGAACGGATGATGGTTATGTTTTATTGAAACATGAGACT GAAATCGGTTCCGGTGACGACGGGAAGGTTGTTTTTTACTCCTTGTACATGCATCTGAAACATCTTGAAGCAGAGATTAA AACTGACGCTAAAATCTATCGTAAAGCCCCGCTGGGTTCTTCGGGAATGACTGATGGGCAGAATGAATTTCATTTCCAGA TTTTCTGTGATGAGGCAAATACCAGGAAATTGGTCGGTAGAACTACTGGCGAGTTAAATATTAATGAAAGTGGCCGGAAA GATGTTGTCTATGGCGATATTCATTTTTATCTGCCTGCAGGAACGAAATTTTATGAGGCGCGGCCTTCGGCTAATATAGC TACCACAACGAACTTGAATGAAGTGCATACCAGTGCGGTTCCGTTGTACGCAAGCATGAGTCTCAGTAAAGGGGCAGGCA CGATGATTACGCGACAGGCATGTGCGAATGCAGAAGGTGCCTTTGAGCCTGTTGGCTCACCTCTGGTCAATGCCGACGGC AAGGACTATGAATACAACCTTTATAAAACAGCCACCTCACGCTATCCGCAAAGTCCGAGTGCCGGGTATGAACTGCTGCG CTTTGGGCGCATTATCAACACTGAACATGAAACCCTGGTTCCTGCTGATGCCCCCTTATGGATGACCGTAAATTATCCCG GTGGACAAGGTGTTGTGAACCTAGCCGTAGCAACTGTTAAAAAGTTCAGCGATGCAGATTTTCCCCACTGGACGGGATGG CAGCTGATTGATGATGATAAAGACATGCATAGCCAGTGCAACTCAGCGGCAATAAGAAAGCTCAGGGAAAAAGACAGGTA TGCAGCACAAAGCAGCAAACTTATCTGCTGTATTCCGTTTGAGTGGGAAAAAAGTACTATTGATACCCGATATAAATGGC TGATGACTGGTCTGCCTTGGGAGCAGTGCACGCCGGAAAAAACCGCAACATGGCAAATACCGGGATCTCAGGAATCGAAG GATCGAATTCTGATGAACGAAGAAGACTACGGTAGGTTTAAACAGCATGCAGAAGCCCTATGCTTTGATTCAGGGGCCTT GGGGTCAGGGAAAGTATGGCATTTTGATCCGCGTGGGTTTATTGAGAATTTTAGGAAAAGTAGATGGTTAGATGAGATAG ATTTAAGTAGGGTTTACTCCACTACAGCTAAAGATGTTAGGGAAAAATATCGTACTTCTATAAATTTTATATTAATTAAA TATGGCATGAATAATCCAATACGCACAGCTCATTTCTTGGGGCAGGGTGCAATTGAATCACAAAACTTAAATCTTATGGT TGAGGGCTCTGTTTCATTTAGCCGTCATCCTGATCATCCATCATTTGCCGAAGAAATTAATGGCTATTATGCTGACCCGA CAGATATTTATGGTTATTTCCACAATTATGAGCGTGAAGGTAATGATTTGGGGAATATCACTAAAAGCGATTTAAGAGAT TCAAGAAATAATCTTTTGACTGTAGTTATCGGAAGGGACTCAAATAATAGGCCGATTTTAACTGCGCCTCAAAGGAGAAC TATTGATTCAAATTTATCTCATATTGGAGATGGGATGAAATTTCGAGGGCGAGGATTTAAACAGTTAACCGGCCTAGCGA ATTACACGGGATATTGGACTTATAGAGGATGGTTGCGTAGTACGGATTATGATAATAGTTGGTGGCGAAATCCCAATCGG TTAAGGGTTCCTTTAATCGATAACCCTCAAAATATATCGACAGAACCGTATAATTGTATTGACTCTGGAGGGCAATTCGT AGCAAAAAATGGAGTTTTACGAAGAGCAGATGCAGGGGTTACACGCGATAGTTCAAGATCTGTTAGCATGGTAATAAACA GATGGGATCAGCAATCTTTTGAGCGCAGATTTCAATCAACGCAAAATACATATTCTATTGTTGGTGATGAGTAA
Upstream 100 bases:
>100_bases ATTTCACTTTTTCCTGACAAGGAGTCACAACATGATTATCAGTCCTCCATTTCTGAGAGATAGAGATGCAACCCAGTCAG ATGCTGACTGGGTTGACGCG
Downstream 100 bases:
>100_bases ATGAAAACTATTATGATGTTTTTTTTGATTTTGTTTGCGAATTCATGTTATAGCGGGGAAGAGCATAAATCAACCCCTCT GGGAGAGGCTGCTATAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 717; Mature: 717
Protein sequence:
>717_residues MMPVSSRRGYPLNTSDSWHGGIHIPHTDSGALPEKVRAIADGTVVSFRMPSKPWERDQFPLKYSPLRGTDDGYVLLKHET EIGSGDDGKVVFYSLYMHLKHLEAEIKTDAKIYRKAPLGSSGMTDGQNEFHFQIFCDEANTRKLVGRTTGELNINESGRK DVVYGDIHFYLPAGTKFYEARPSANIATTTNLNEVHTSAVPLYASMSLSKGAGTMITRQACANAEGAFEPVGSPLVNADG KDYEYNLYKTATSRYPQSPSAGYELLRFGRIINTEHETLVPADAPLWMTVNYPGGQGVVNLAVATVKKFSDADFPHWTGW QLIDDDKDMHSQCNSAAIRKLREKDRYAAQSSKLICCIPFEWEKSTIDTRYKWLMTGLPWEQCTPEKTATWQIPGSQESK DRILMNEEDYGRFKQHAEALCFDSGALGSGKVWHFDPRGFIENFRKSRWLDEIDLSRVYSTTAKDVREKYRTSINFILIK YGMNNPIRTAHFLGQGAIESQNLNLMVEGSVSFSRHPDHPSFAEEINGYYADPTDIYGYFHNYEREGNDLGNITKSDLRD SRNNLLTVVIGRDSNNRPILTAPQRRTIDSNLSHIGDGMKFRGRGFKQLTGLANYTGYWTYRGWLRSTDYDNSWWRNPNR LRVPLIDNPQNISTEPYNCIDSGGQFVAKNGVLRRADAGVTRDSSRSVSMVINRWDQQSFERRFQSTQNTYSIVGDE
Sequences:
>Translated_717_residues MMPVSSRRGYPLNTSDSWHGGIHIPHTDSGALPEKVRAIADGTVVSFRMPSKPWERDQFPLKYSPLRGTDDGYVLLKHET EIGSGDDGKVVFYSLYMHLKHLEAEIKTDAKIYRKAPLGSSGMTDGQNEFHFQIFCDEANTRKLVGRTTGELNINESGRK DVVYGDIHFYLPAGTKFYEARPSANIATTTNLNEVHTSAVPLYASMSLSKGAGTMITRQACANAEGAFEPVGSPLVNADG KDYEYNLYKTATSRYPQSPSAGYELLRFGRIINTEHETLVPADAPLWMTVNYPGGQGVVNLAVATVKKFSDADFPHWTGW QLIDDDKDMHSQCNSAAIRKLREKDRYAAQSSKLICCIPFEWEKSTIDTRYKWLMTGLPWEQCTPEKTATWQIPGSQESK DRILMNEEDYGRFKQHAEALCFDSGALGSGKVWHFDPRGFIENFRKSRWLDEIDLSRVYSTTAKDVREKYRTSINFILIK YGMNNPIRTAHFLGQGAIESQNLNLMVEGSVSFSRHPDHPSFAEEINGYYADPTDIYGYFHNYEREGNDLGNITKSDLRD SRNNLLTVVIGRDSNNRPILTAPQRRTIDSNLSHIGDGMKFRGRGFKQLTGLANYTGYWTYRGWLRSTDYDNSWWRNPNR LRVPLIDNPQNISTEPYNCIDSGGQFVAKNGVLRRADAGVTRDSSRSVSMVINRWDQQSFERRFQSTQNTYSIVGDE >Mature_717_residues MMPVSSRRGYPLNTSDSWHGGIHIPHTDSGALPEKVRAIADGTVVSFRMPSKPWERDQFPLKYSPLRGTDDGYVLLKHET EIGSGDDGKVVFYSLYMHLKHLEAEIKTDAKIYRKAPLGSSGMTDGQNEFHFQIFCDEANTRKLVGRTTGELNINESGRK DVVYGDIHFYLPAGTKFYEARPSANIATTTNLNEVHTSAVPLYASMSLSKGAGTMITRQACANAEGAFEPVGSPLVNADG KDYEYNLYKTATSRYPQSPSAGYELLRFGRIINTEHETLVPADAPLWMTVNYPGGQGVVNLAVATVKKFSDADFPHWTGW QLIDDDKDMHSQCNSAAIRKLREKDRYAAQSSKLICCIPFEWEKSTIDTRYKWLMTGLPWEQCTPEKTATWQIPGSQESK DRILMNEEDYGRFKQHAEALCFDSGALGSGKVWHFDPRGFIENFRKSRWLDEIDLSRVYSTTAKDVREKYRTSINFILIK YGMNNPIRTAHFLGQGAIESQNLNLMVEGSVSFSRHPDHPSFAEEINGYYADPTDIYGYFHNYEREGNDLGNITKSDLRD SRNNLLTVVIGRDSNNRPILTAPQRRTIDSNLSHIGDGMKFRGRGFKQLTGLANYTGYWTYRGWLRSTDYDNSWWRNPNR LRVPLIDNPQNISTEPYNCIDSGGQFVAKNGVLRRADAGVTRDSSRSVSMVINRWDQQSFERRFQSTQNTYSIVGDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81206; Mature: 81206
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMPVSSRRGYPLNTSDSWHGGIHIPHTDSGALPEKVRAIADGTVVSFRMPSKPWERDQFP CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCC LKYSPLRGTDDGYVLLKHETEIGSGDDGKVVFYSLYMHLKHLEAEIKTDAKIYRKAPLGS EEECCCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHEECCCCC SGMTDGQNEFHFQIFCDEANTRKLVGRTTGELNINESGRKDVVYGDIHFYLPAGTKFYEA CCCCCCCCCEEEEEEECCCCCCEEEECCCCEEEECCCCCCCEEEEEEEEEECCCCEEEEC RPSANIATTTNLNEVHTSAVPLYASMSLSKGAGTMITRQACANAEGAFEPVGSPLVNADG CCCCCEEEECCCHHHHCCCCCEEEEEECCCCCCCEEEHHHHCCCCCCCCCCCCCEECCCC KDYEYNLYKTATSRYPQSPSAGYELLRFGRIINTEHETLVPADAPLWMTVNYPGGQGVVN CCEEEEEEEEHHHCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCCCCHHH LAVATVKKFSDADFPHWTGWQLIDDDKDMHSQCNSAAIRKLREKDRYAAQSSKLICCIPF HHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC EWEKSTIDTRYKWLMTGLPWEQCTPEKTATWQIPGSQESKDRILMNEEDYGRFKQHAEAL CCCCCCHHHHEEEEECCCCHHHCCCCCCEEEECCCCCCCCCCEEECCCHHHHHHHHHHHE CFDSGALGSGKVWHFDPRGFIENFRKSRWLDEIDLSRVYSTTAKDVREKYRTSINFILIK EECCCCCCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEE YGMNNPIRTAHFLGQGAIESQNLNLMVEGSVSFSRHPDHPSFAEEINGYYADPTDIYGYF ECCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCEECCHHHHHHHH HNYEREGNDLGNITKSDLRDSRNNLLTVVIGRDSNNRPILTAPQRRTIDSNLSHIGDGMK HCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCHHHHHHHHCCCCE FRGRGFKQLTGLANYTGYWTYRGWLRSTDYDNSWWRNPNRLRVPLIDNPQNISTEPYNCI ECCCCHHHHHCCCCCCEEEEEECEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHH DSGGQFVAKNGVLRRADAGVTRDSSRSVSMVINRWDQQSFERRFQSTQNTYSIVGDE CCCCCEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC >Mature Secondary Structure MMPVSSRRGYPLNTSDSWHGGIHIPHTDSGALPEKVRAIADGTVVSFRMPSKPWERDQFP CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCC LKYSPLRGTDDGYVLLKHETEIGSGDDGKVVFYSLYMHLKHLEAEIKTDAKIYRKAPLGS EEECCCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHEECCCCC SGMTDGQNEFHFQIFCDEANTRKLVGRTTGELNINESGRKDVVYGDIHFYLPAGTKFYEA CCCCCCCCCEEEEEEECCCCCCEEEECCCCEEEECCCCCCCEEEEEEEEEECCCCEEEEC RPSANIATTTNLNEVHTSAVPLYASMSLSKGAGTMITRQACANAEGAFEPVGSPLVNADG CCCCCEEEECCCHHHHCCCCCEEEEEECCCCCCCEEEHHHHCCCCCCCCCCCCCEECCCC KDYEYNLYKTATSRYPQSPSAGYELLRFGRIINTEHETLVPADAPLWMTVNYPGGQGVVN CCEEEEEEEEHHHCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCCCCHHH LAVATVKKFSDADFPHWTGWQLIDDDKDMHSQCNSAAIRKLREKDRYAAQSSKLICCIPF HHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC EWEKSTIDTRYKWLMTGLPWEQCTPEKTATWQIPGSQESKDRILMNEEDYGRFKQHAEAL CCCCCCHHHHEEEEECCCCHHHCCCCCCEEEECCCCCCCCCCEEECCCHHHHHHHHHHHE CFDSGALGSGKVWHFDPRGFIENFRKSRWLDEIDLSRVYSTTAKDVREKYRTSINFILIK EECCCCCCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEE YGMNNPIRTAHFLGQGAIESQNLNLMVEGSVSFSRHPDHPSFAEEINGYYADPTDIYGYF ECCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCEECCHHHHHHHH HNYEREGNDLGNITKSDLRDSRNNLLTVVIGRDSNNRPILTAPQRRTIDSNLSHIGDGMK HCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCEEECCCCCCHHHHHHHHCCCCE FRGRGFKQLTGLANYTGYWTYRGWLRSTDYDNSWWRNPNRLRVPLIDNPQNISTEPYNCI ECCCCHHHHHCCCCCCEEEEEECEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHH DSGGQFVAKNGVLRRADAGVTRDSSRSVSMVINRWDQQSFERRFQSTQNTYSIVGDE CCCCCEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA