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The map label for this gene is xerC [H]

Identifier: 108813320

GI number: 108813320

Start: 3560158

End: 3560406

Strand: Reverse

Name: xerC [H]

Synonym: YPN_3160

Alternate gene names: 108813320

Gene position: 3560406-3560158 (Counterclockwise)

Preceding gene: 108813321

Following gene: 108813319

Centisome position: 78.52

GC content: 46.99

Gene sequence:

>249_bases
ATGGACAGTCCCCCGTTACGTTCTTTCTTCCGCAGGCTTTCAGTCGAATGCCGTTGTACGATTAGTCCACACCGATTTCG
ACACACTATCGCCACTGAGATGATGAAATCACCGGATCGTAATCTGAAAGTGGTTCAGACCCTGCTAGGGCATTCAAGTA
TTGCGGTCACGTTGGAATATGTTGAGGGCGATATAGACAGCCTCAGATTGGCGTTGGAAGAGACTTTCGAGAGAAAAGAG
GTTTTTTAA

Upstream 100 bases:

>100_bases
AGTATCCATTTTCTTAATTAAAGGATTAATCAATGATGTAGTGGATCAGTTATTCAACATCAGCCGGATTGACGGGAGAA
AAGAGACCGTCACTGAAAAT

Downstream 100 bases:

>100_bases
AAAAATCGGCATAACAGAAAGAAAAAACTACCGCTTTCCTTAACAGGATATTGACAGGAGCGCTGAAAAACTGTCAATAT
CCTCCGCCTTAAGACGCAAG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFERKE
VF

Sequences:

>Translated_82_residues
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFERKE
VF
>Mature_82_residues
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEYVEGDIDSLRLALEETFERKE
VF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 9539; Mature: 9539

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY
CCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEHH
VEGDIDSLRLALEETFERKEVF
HHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDSPPLRSFFRRLSVECRCTISPHRFRHTIATEMMKSPDRNLKVVQTLLGHSSIAVTLEY
CCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEHH
VEGDIDSLRLALEETFERKEVF
HHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA