| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108813230
Identifier: 108813230
GI number: 108813230
Start: 3453611
End: 3455806
Strand: Reverse
Name: 108813230
Synonym: YPN_3070
Alternate gene names: NA
Gene position: 3455806-3453611 (Counterclockwise)
Preceding gene: 108813231
Following gene: 108813229
Centisome position: 76.21
GC content: 46.04
Gene sequence:
>2196_bases ATGAAAATAAACAGTAAGTTATGGATGGGCCTCCTAATGGGCATGCTAGGTATGGCGGTACCTCCATCACAGGCTTCTTC TGATAATACTGGCTGTGTGTGGGGAAAATATTGCCCGCTCAGTGGTGTACCCTTTTTGGATGTTTACAATGATACTCGGG TTAATATGATGTTATTGGTTGGAGAACCAAAAAATTTCATATTGCCACGTTTAACGATGCCAGCGGATATTACCCGTAGT AGGAATTACCATTTTGGTGAGTTTTATTATGATGAAATGAGTTTTCCGAAGCGGGAAAAAAGTCTTACAGATGAGAATAA TGATAGCCCTTCGGAAGAAACGCCATTTGATAAGATGGCAAAGACGCTAGGCATCAATTCGGCTTCGTTTAAGGGAACCA ATGCCCGATATAGAGAAGCACGGCATATCTCCAATAATCCCGCATCAGTTGAGCAATTTTTTACCGCTTTACTGGCAGAC TCGTCCTTAACTGCCGACGATCGACATAATTTAGCCCTCTGGCGATCCAATATTTTTCATAATGTCGATGCACCGGTCGA TGGTGGAATTACACCGCCACCTTTTAACATTGTGCCAGGCTCACATGTTGATGCTTTTAGCGATTATCTTCATGGCGCCA ATGCATTTTATCGGGGCGATTACCCAGAGGCCACCGCTTTATTTTCTGCCCTCCAAAAGAGTTCTCAAGCATGGGTCGCA GAAACAGCGACTTATATGTTGTTCCGAGTTGCGCTCAATGAGAGCAGTACAAATGCGTCGGATAAATATGGCATGTTTGA AACTAAAAATATCAATCAGGATGCCGCCCGTCAGGCATTGGATTATTCTCGGGCCTATTTAGTTGCTTATCCCCAAGGCA TTTACGCAGAGTCGATTCAGGGGTTGGAGCGCCGTATTTACTGGTACCTCTCTGATTGGCAACAACTGGCGCGGCTGTAT GAAGAGACATTACTGGCAGCACCGAATGCTGAAGCTTTGTGGGATACCGTATCAGAAGTTGATGCTAAATTTATCAGCAA AGATGCCTTTGGTGGCGAGCCCTTTATCAGCGATATGCAAGCACCTTTACTGACCTTCACGCAAACATTACGTTGGTTGC GATTAGGGGGGCGCCAGAGTGGCTCTGAGTTGGAGGTTACGCAGGAGAAACTGGCAAGTTATAAACCGATGTTTGTCGAT GCGGATAGGCTCCCCCTTTGGCAGTATCTACAGACGGCCTGGCTCTATTATCATGAGCAAGATTATGCCGGTGTCGTCGC CACTGTCTCGGCTGTCGACTCTCTGCCAGCCACTGACATTGTGACCTTCAGTCAACAGATTCTATATGGTGATGCATTGG TGGCTCAACAACAATGGTCACAGGCCGAAGCACATTGGCGCAAGCTGCTGGGCCTGGTGCAATCGCCGCAACAACAGCAA TATCTGCAACTCAAACTCGCCGCGGTTCTGGTGAACAGTGATCAAATTGAAGCCATATTTACCGCAGATAGCCCAATCAA AAACCTGCGTTATCGTTCTCTGATACTCAAAACAAAAGCTCAAAAAGCACTTTTACAACAGCAAGTTATTTCTGGTGCTA ATGATGAGGAAAAAACCATTGCTCTGCACACGCTATTACTGCGGGATCTTATGCTTGGTGATTATCAGGGTTATGAGCAG GATAAACAGTTAAGCCCTCATATTCAGCAATCCGTCGATCAAAAAAGCTTTGCCGATGTAGACCTGGCGGCGTTCGATTG GCAGGGCGATAATGTGGAGCAGGGCTATGCCTGTGCTGCGTTAGATGGGACGGTAAAAGCATTGGTTAAAAATAAAACGG ATGGTCATGCCCTCAACTGCTTGGGAGAATTCTTCCGTGTAACTGACATCAATATCAATACTTATCAGGAAGGGGAGGGC AATGAGGTGCTGAATGTCGCAGTCCATGCACATGAAACAGTGATAACTCAGCCCAATCGTTTCGATTATTATCAACACGT TATCAACGACCCGAAGGCGGAGCCAGAAGATAAAAGCTATGCGCTTTACCGGGCTGTTATGTGCTATGCCCCATCGGGCT ATAATCAATGTGGGGGTGAGGATGTCGATATTGCAACACGTAAGCGTTGGTTTAGCTCATTGAAAACTCAGTATAAAGGT AGCCGATGGGCAGAACGGCTCAACTATTACTGGTAA
Upstream 100 bases:
>100_bases AGCAGTATCCGATATTCATCTTGGATTTCAGTGCTTTCTTGTTCTTTTTGCTGAAAATATAAGCGACAATGTCGGATTTC CTGAAGGGTGCCAAGCGAGA
Downstream 100 bases:
>100_bases GCTGCCTATTAGCGCTATTTATGCCGCCCGCGATGGCAGAGGTTAGCGACAAACTGCAGTTGAGCCATAAGGTGTATGCC CATGATTATCAGGCGTTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 731; Mature: 731
Protein sequence:
>731_residues MKINSKLWMGLLMGMLGMAVPPSQASSDNTGCVWGKYCPLSGVPFLDVYNDTRVNMMLLVGEPKNFILPRLTMPADITRS RNYHFGEFYYDEMSFPKREKSLTDENNDSPSEETPFDKMAKTLGINSASFKGTNARYREARHISNNPASVEQFFTALLAD SSLTADDRHNLALWRSNIFHNVDAPVDGGITPPPFNIVPGSHVDAFSDYLHGANAFYRGDYPEATALFSALQKSSQAWVA ETATYMLFRVALNESSTNASDKYGMFETKNINQDAARQALDYSRAYLVAYPQGIYAESIQGLERRIYWYLSDWQQLARLY EETLLAAPNAEALWDTVSEVDAKFISKDAFGGEPFISDMQAPLLTFTQTLRWLRLGGRQSGSELEVTQEKLASYKPMFVD ADRLPLWQYLQTAWLYYHEQDYAGVVATVSAVDSLPATDIVTFSQQILYGDALVAQQQWSQAEAHWRKLLGLVQSPQQQQ YLQLKLAAVLVNSDQIEAIFTADSPIKNLRYRSLILKTKAQKALLQQQVISGANDEEKTIALHTLLLRDLMLGDYQGYEQ DKQLSPHIQQSVDQKSFADVDLAAFDWQGDNVEQGYACAALDGTVKALVKNKTDGHALNCLGEFFRVTDININTYQEGEG NEVLNVAVHAHETVITQPNRFDYYQHVINDPKAEPEDKSYALYRAVMCYAPSGYNQCGGEDVDIATRKRWFSSLKTQYKG SRWAERLNYYW
Sequences:
>Translated_731_residues MKINSKLWMGLLMGMLGMAVPPSQASSDNTGCVWGKYCPLSGVPFLDVYNDTRVNMMLLVGEPKNFILPRLTMPADITRS RNYHFGEFYYDEMSFPKREKSLTDENNDSPSEETPFDKMAKTLGINSASFKGTNARYREARHISNNPASVEQFFTALLAD SSLTADDRHNLALWRSNIFHNVDAPVDGGITPPPFNIVPGSHVDAFSDYLHGANAFYRGDYPEATALFSALQKSSQAWVA ETATYMLFRVALNESSTNASDKYGMFETKNINQDAARQALDYSRAYLVAYPQGIYAESIQGLERRIYWYLSDWQQLARLY EETLLAAPNAEALWDTVSEVDAKFISKDAFGGEPFISDMQAPLLTFTQTLRWLRLGGRQSGSELEVTQEKLASYKPMFVD ADRLPLWQYLQTAWLYYHEQDYAGVVATVSAVDSLPATDIVTFSQQILYGDALVAQQQWSQAEAHWRKLLGLVQSPQQQQ YLQLKLAAVLVNSDQIEAIFTADSPIKNLRYRSLILKTKAQKALLQQQVISGANDEEKTIALHTLLLRDLMLGDYQGYEQ DKQLSPHIQQSVDQKSFADVDLAAFDWQGDNVEQGYACAALDGTVKALVKNKTDGHALNCLGEFFRVTDININTYQEGEG NEVLNVAVHAHETVITQPNRFDYYQHVINDPKAEPEDKSYALYRAVMCYAPSGYNQCGGEDVDIATRKRWFSSLKTQYKG SRWAERLNYYW >Mature_731_residues MKINSKLWMGLLMGMLGMAVPPSQASSDNTGCVWGKYCPLSGVPFLDVYNDTRVNMMLLVGEPKNFILPRLTMPADITRS RNYHFGEFYYDEMSFPKREKSLTDENNDSPSEETPFDKMAKTLGINSASFKGTNARYREARHISNNPASVEQFFTALLAD SSLTADDRHNLALWRSNIFHNVDAPVDGGITPPPFNIVPGSHVDAFSDYLHGANAFYRGDYPEATALFSALQKSSQAWVA ETATYMLFRVALNESSTNASDKYGMFETKNINQDAARQALDYSRAYLVAYPQGIYAESIQGLERRIYWYLSDWQQLARLY EETLLAAPNAEALWDTVSEVDAKFISKDAFGGEPFISDMQAPLLTFTQTLRWLRLGGRQSGSELEVTQEKLASYKPMFVD ADRLPLWQYLQTAWLYYHEQDYAGVVATVSAVDSLPATDIVTFSQQILYGDALVAQQQWSQAEAHWRKLLGLVQSPQQQQ YLQLKLAAVLVNSDQIEAIFTADSPIKNLRYRSLILKTKAQKALLQQQVISGANDEEKTIALHTLLLRDLMLGDYQGYEQ DKQLSPHIQQSVDQKSFADVDLAAFDWQGDNVEQGYACAALDGTVKALVKNKTDGHALNCLGEFFRVTDININTYQEGEG NEVLNVAVHAHETVITQPNRFDYYQHVINDPKAEPEDKSYALYRAVMCYAPSGYNQCGGEDVDIATRKRWFSSLKTQYKG SRWAERLNYYW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82558; Mature: 82558
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKINSKLWMGLLMGMLGMAVPPSQASSDNTGCVWGKYCPLSGVPFLDVYNDTRVNMMLLV CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCEEEEEEE GEPKNFILPRLTMPADITRSRNYHFGEFYYDEMSFPKREKSLTDENNDSPSEETPFDKMA ECCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCHHHHH KTLGINSASFKGTNARYREARHISNNPASVEQFFTALLADSSLTADDRHNLALWRSNIFH HHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC NVDAPVDGGITPPPFNIVPGSHVDAFSDYLHGANAFYRGDYPEATALFSALQKSSQAWVA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHCCCHHHH ETATYMLFRVALNESSTNASDKYGMFETKNINQDAARQALDYSRAYLVAYPQGIYAESIQ HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHH GLERRIYWYLSDWQQLARLYEETLLAAPNAEALWDTVSEVDAKFISKDAFGGEPFISDMQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH APLLTFTQTLRWLRLGGRQSGSELEVTQEKLASYKPMFVDADRLPLWQYLQTAWLYYHEQ HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHEECC DYAGVVATVSAVDSLPATDIVTFSQQILYGDALVAQQQWSQAEAHWRKLLGLVQSPQQQQ CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH YLQLKLAAVLVNSDQIEAIFTADSPIKNLRYRSLILKTKAQKALLQQQVISGANDEEKTI HHHHHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH ALHTLLLRDLMLGDYQGYEQDKQLSPHIQQSVDQKSFADVDLAAFDWQGDNVEQGYACAA HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHCCCCEEEEEECCCCCCCCCEEEEE LDGTVKALVKNKTDGHALNCLGEFFRVTDININTYQEGEGNEVLNVAVHAHETVITQPNR HHHHHHHHHHCCCCCHHHHHHHHHHEEEEECEECCCCCCCCCEEEEEEEECCEEEECCCH FDYYQHVINDPKAEPEDKSYALYRAVMCYAPSGYNQCGGEDVDIATRKRWFSSLKTQYKG HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC SRWAERLNYYW HHHHHHHCCCC >Mature Secondary Structure MKINSKLWMGLLMGMLGMAVPPSQASSDNTGCVWGKYCPLSGVPFLDVYNDTRVNMMLLV CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCEEEEEEE GEPKNFILPRLTMPADITRSRNYHFGEFYYDEMSFPKREKSLTDENNDSPSEETPFDKMA ECCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCHHHHH KTLGINSASFKGTNARYREARHISNNPASVEQFFTALLADSSLTADDRHNLALWRSNIFH HHHCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC NVDAPVDGGITPPPFNIVPGSHVDAFSDYLHGANAFYRGDYPEATALFSALQKSSQAWVA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHCCCHHHH ETATYMLFRVALNESSTNASDKYGMFETKNINQDAARQALDYSRAYLVAYPQGIYAESIQ HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHH GLERRIYWYLSDWQQLARLYEETLLAAPNAEALWDTVSEVDAKFISKDAFGGEPFISDMQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH APLLTFTQTLRWLRLGGRQSGSELEVTQEKLASYKPMFVDADRLPLWQYLQTAWLYYHEQ HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHEECC DYAGVVATVSAVDSLPATDIVTFSQQILYGDALVAQQQWSQAEAHWRKLLGLVQSPQQQQ CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH YLQLKLAAVLVNSDQIEAIFTADSPIKNLRYRSLILKTKAQKALLQQQVISGANDEEKTI HHHHHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH ALHTLLLRDLMLGDYQGYEQDKQLSPHIQQSVDQKSFADVDLAAFDWQGDNVEQGYACAA HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHCCCCEEEEEECCCCCCCCCEEEEE LDGTVKALVKNKTDGHALNCLGEFFRVTDININTYQEGEGNEVLNVAVHAHETVITQPNR HHHHHHHHHHCCCCCHHHHHHHHHHEEEEECEECCCCCCCCCEEEEEEEECCEEEECCCH FDYYQHVINDPKAEPEDKSYALYRAVMCYAPSGYNQCGGEDVDIATRKRWFSSLKTQYKG HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC SRWAERLNYYW HHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA