| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
Click here to switch to the map view.
The map label for this gene is 108812944
Identifier: 108812944
GI number: 108812944
Start: 3141453
End: 3142310
Strand: Reverse
Name: 108812944
Synonym: YPN_2784
Alternate gene names: NA
Gene position: 3142310-3141453 (Counterclockwise)
Preceding gene: 108812945
Following gene: 108812943
Centisome position: 69.3
GC content: 46.97
Gene sequence:
>858_bases GTGACTAGTTTGCCAATAACTGCTAAGCAATTCAAACCCTCCATTGCTGAGGAGCCTAAGATTGCCAGGCTAAAACAGCT TGATCGGCATAGTTTGGAACAATTAATCCGTGGTGACATCCTGGCAATTCGTATTCCCAATTACTGCCCTGAAAAAACCG CTGCATCATTAAATCAATACATTAATCAAACCGCAAAGCTGGATGAATACACCCATGAGGTCTATGAAAAAGACCAGGTG GTACAAAATTTTTACGGTGTCCACCGCTGGGGAACGCCATTCAATACGGCCTACGGTAAAGCTGAAAACGAGAGTGCAAA GCAGAAGTATTATCGTGACGCAGCCCAGATGCGCATACTGATTGACCGTCTTTGCGCTCCAGATTTGCCGCCAATTCAAG CGTTAATCGAAAATATTAAACAGCACTGGCCAGAGGGCGTAGTGACTGCCTCTTTTGAAGGGAAACCGATGTTTGCCGGT ATCATTCGCGTGATGTTTCCTGAAACGGCGCATCTATCCGAAACGGTTCCACATGTGGATTGCCTGCCATTTTCCGTTGC CGAGTTAGAGCATCAATTCAGCGCTAATATTTATATTGATACACCACCTGTTGGCGGTGAATTAGTCGTCTGGGATACTG AGGCCTTTTCCTTCGCCGAAGTCGCGCTATTTGAGGGAGGAAAACTGCCCGAAGAGCGTTTGCAGCGGCCTCTGCGCATT CAACCACAGAAAAATGAGCTGGTGATCATCAATACCCGCCGCCCTCACGCCATTTGCGGGTTTGATTCAGGCAAACGAAT CAGCATGCAGTCATTTATAGGTTACAACACGAACCAGCCGTTCTATTTCTGGTGTTAA
Upstream 100 bases:
>100_bases CTGCTCGTCAATAAGACAACATCTCATCATGTTATCCCTTAGCAGAATTATCGTATTATTTAAAATGATAGGGTTTCTAA ATTAATGGAGCCAAATCATT
Downstream 100 bases:
>100_bases TGACTTCAAAATGAGAGCTTTTTATGACTCCTGAAGAGTTTCGCCGCCATGGCTATGCCATGATCGACCTGATTGCTGAT TACCGACAAAATATCGAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MTSLPITAKQFKPSIAEEPKIARLKQLDRHSLEQLIRGDILAIRIPNYCPEKTAASLNQYINQTAKLDEYTHEVYEKDQV VQNFYGVHRWGTPFNTAYGKAENESAKQKYYRDAAQMRILIDRLCAPDLPPIQALIENIKQHWPEGVVTASFEGKPMFAG IIRVMFPETAHLSETVPHVDCLPFSVAELEHQFSANIYIDTPPVGGELVVWDTEAFSFAEVALFEGGKLPEERLQRPLRI QPQKNELVIINTRRPHAICGFDSGKRISMQSFIGYNTNQPFYFWC
Sequences:
>Translated_285_residues MTSLPITAKQFKPSIAEEPKIARLKQLDRHSLEQLIRGDILAIRIPNYCPEKTAASLNQYINQTAKLDEYTHEVYEKDQV VQNFYGVHRWGTPFNTAYGKAENESAKQKYYRDAAQMRILIDRLCAPDLPPIQALIENIKQHWPEGVVTASFEGKPMFAG IIRVMFPETAHLSETVPHVDCLPFSVAELEHQFSANIYIDTPPVGGELVVWDTEAFSFAEVALFEGGKLPEERLQRPLRI QPQKNELVIINTRRPHAICGFDSGKRISMQSFIGYNTNQPFYFWC >Mature_284_residues TSLPITAKQFKPSIAEEPKIARLKQLDRHSLEQLIRGDILAIRIPNYCPEKTAASLNQYINQTAKLDEYTHEVYEKDQVV QNFYGVHRWGTPFNTAYGKAENESAKQKYYRDAAQMRILIDRLCAPDLPPIQALIENIKQHWPEGVVTASFEGKPMFAGI IRVMFPETAHLSETVPHVDCLPFSVAELEHQFSANIYIDTPPVGGELVVWDTEAFSFAEVALFEGGKLPEERLQRPLRIQ PQKNELVIINTRRPHAICGFDSGKRISMQSFIGYNTNQPFYFWC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32570; Mature: 32438
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLPITAKQFKPSIAEEPKIARLKQLDRHSLEQLIRGDILAIRIPNYCPEKTAASLNQY CCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH INQTAKLDEYTHEVYEKDQVVQNFYGVHRWGTPFNTAYGKAENESAKQKYYRDAAQMRIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH IDRLCAPDLPPIQALIENIKQHWPEGVVTASFEGKPMFAGIIRVMFPETAHLSETVPHVD HHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHCCCCCC CLPFSVAELEHQFSANIYIDTPPVGGELVVWDTEAFSFAEVALFEGGKLPEERLQRPLRI CCCHHHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHCCCEEC QPQKNELVIINTRRPHAICGFDSGKRISMQSFIGYNTNQPFYFWC CCCCCCEEEEECCCCCEEECCCCCCEEEHHHHHCCCCCCCEEEEC >Mature Secondary Structure TSLPITAKQFKPSIAEEPKIARLKQLDRHSLEQLIRGDILAIRIPNYCPEKTAASLNQY CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH INQTAKLDEYTHEVYEKDQVVQNFYGVHRWGTPFNTAYGKAENESAKQKYYRDAAQMRIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH IDRLCAPDLPPIQALIENIKQHWPEGVVTASFEGKPMFAGIIRVMFPETAHLSETVPHVD HHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHCCCCCC CLPFSVAELEHQFSANIYIDTPPVGGELVVWDTEAFSFAEVALFEGGKLPEERLQRPLRI CCCHHHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCCCCHHHHCCCEEC QPQKNELVIINTRRPHAICGFDSGKRISMQSFIGYNTNQPFYFWC CCCCCCEEEEECCCCCEEECCCCCCEEEHHHHHCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA