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The map label for this gene is ydbJ [H]

Identifier: 108811952

GI number: 108811952

Start: 2023765

End: 2024178

Strand: Reverse

Name: ydbJ [H]

Synonym: YPN_1790

Alternate gene names: 108811952

Gene position: 2024178-2023765 (Counterclockwise)

Preceding gene: 108811954

Following gene: 108811949

Centisome position: 44.64

GC content: 44.93

Gene sequence:

>414_bases
GTGATGTACTACATAATACTAGCTAGGTTTATAAATTATAGGTTGATAAGTCTATCCTGCCGGAGCAAAAGAATGAGAAT
ATTTCAGGGAGTAGTGTGCGGTATGGCGCTATTTTTAGCCGCATGTAGCAGCAATGATTCAAATATCAATACGTTAAATA
ATAGCAATACGTTAAATAATAGCGAGACCTACGAACCCGAGCAGCAGGCTACCAACGCTATCGCTTATCGCAATGTGAAT
ATGTCAAATGACGTCAATATGTCCAATTCGGCGGCAGCTAATTGTGCTAATGCGGGGGGAATATTGGCTAACACGAGGCA
ACTTCATGGCGGTAGCGTAGGCATGTGCCAGTTACCGGATGGCAAACGTTGTGACGAGGAAGCGTTGTTGCGCGGTGCAT
GCCCGGTGCGTTAA

Upstream 100 bases:

>100_bases
ATTGACTGACCCGAATATTGGATGAGTTGTGTATTATACTGGGAATATCTTTATCATGTCGTGCTTCATCTATTCCCAAT
AGCGTGATGTACTAAATAGG

Downstream 100 bases:

>100_bases
TTGGCAGCAGCTATCGGAAAACTGCCGCCTAAATAAGAGGTTATGCATCAATGAGCATCAGTTAACCCAATCTTTCTGTT
GGTAAACTAAGGTGTGCGTA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MMYYIILARFINYRLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVN
MSNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR

Sequences:

>Translated_137_residues
MMYYIILARFINYRLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVN
MSNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR
>Mature_137_residues
MMYYIILARFINYRLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNNSETYEPEQQATNAIAYRNVN
MSNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPDGKRCDEEALLRGACPVR

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081894, Length=110, Percent_Identity=41.8181818181818, Blast_Score=66, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005590 [H]

Pfam domain/function: PF03891 DUF333 [H]

EC number: NA

Molecular weight: Translated: 14951; Mature: 14951

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
10.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYYIILARFINYRLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNN
CHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
SETYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPD
CCCCCCHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCCCEEEEECCC
GKRCDEEALLRGACPVR
CCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MMYYIILARFINYRLISLSCRSKRMRIFQGVVCGMALFLAACSSNDSNINTLNNSNTLNN
CHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
SETYEPEQQATNAIAYRNVNMSNDVNMSNSAAANCANAGGILANTRQLHGGSVGMCQLPD
CCCCCCHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCCCEEEEECCC
GKRCDEEALLRGACPVR
CCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]