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The map label for this gene is ybdD [C]

Identifier: 108811864

GI number: 108811864

Start: 1916538

End: 1916867

Strand: Reverse

Name: ybdD [C]

Synonym: YPN_1702

Alternate gene names: 108811864

Gene position: 1916867-1916538 (Counterclockwise)

Preceding gene: 108811865

Following gene: 108811862

Centisome position: 42.27

GC content: 56.36

Gene sequence:

>330_bases
TTGTATACCGTGAGGAGGTCGCCCGTGGTTAACTCTGGTATTCCGTACCGCTCCCGGCCAATAACCGGGGGGAAGATTAC
TCGCTGCGTGCCACTTACTCAGGTCGAAGCAGCCCCAACCACGCTGTGGGCATGGGTACGGCTGATTACACATCGGCTGG
CGCAAAGCTTCAGGCTGATGGTTGGGGTGCAGGATTACAGTAATTATGTCAATCATATGCGCCATAAGCATCCTGACACC
CCCCCAATGACTGAGCGGGAGTTCCATCGTTATTGCCTGGATGCCCGCTTCCCCAGCGAAGGGGGAAAACTGGGGAAATG
CCCGTGCTAG

Upstream 100 bases:

>100_bases
GCATTCTTTATGCTGGTGGCGGTGACGATGCTAGTTTCTGCCTTCTTTGTGATTCGTCGCGCACTGAAATCCAGCAAACC
AACAACCCATGAAACTGAAA

Downstream 100 bases:

>100_bases
AGTGGCAATAGACATAAATTAGTGACACCGTAACGCCCTATAGTGATTTTATAGGGCGTTATTCTTTTACCGCTCATTGT
TACTGTCTGTAACTTCTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MYTVRRSPVVNSGIPYRSRPITGGKITRCVPLTQVEAAPTTLWAWVRLITHRLAQSFRLMVGVQDYSNYVNHMRHKHPDT
PPMTEREFHRYCLDARFPSEGGKLGKCPC

Sequences:

>Translated_109_residues
MYTVRRSPVVNSGIPYRSRPITGGKITRCVPLTQVEAAPTTLWAWVRLITHRLAQSFRLMVGVQDYSNYVNHMRHKHPDT
PPMTEREFHRYCLDARFPSEGGKLGKCPC
>Mature_109_residues
MYTVRRSPVVNSGIPYRSRPITGGKITRCVPLTQVEAAPTTLWAWVRLITHRLAQSFRLMVGVQDYSNYVNHMRHKHPDT
PPMTEREFHRYCLDARFPSEGGKLGKCPC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081761, Length=50, Percent_Identity=54, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12542; Mature: 12542

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTVRRSPVVNSGIPYRSRPITGGKITRCVPLTQVEAAPTTLWAWVRLITHRLAQSFRLM
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VGVQDYSNYVNHMRHKHPDTPPMTEREFHRYCLDARFPSEGGKLGKCPC
HCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYTVRRSPVVNSGIPYRSRPITGGKITRCVPLTQVEAAPTTLWAWVRLITHRLAQSFRLM
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VGVQDYSNYVNHMRHKHPDTPPMTEREFHRYCLDARFPSEGGKLGKCPC
HCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA