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The map label for this gene is intQ [H]

Identifier: 108811723

GI number: 108811723

Start: 1771628

End: 1772866

Strand: Reverse

Name: intQ [H]

Synonym: YPN_1560

Alternate gene names: 108811723

Gene position: 1772866-1771628 (Counterclockwise)

Preceding gene: 108811726

Following gene: 108811718

Centisome position: 39.1

GC content: 49.07

Gene sequence:

>1239_bases
TTGCACCGTTCGTTACACCAGGGGCAAAGGGTTAGGGAAAACCTCGGCGTTCCGGACACGGCGAAAAACAGGAGGATGGC
TGGCGAGTTGAGGGAGTCTGTTCGCTACACCATCAAGATAGGCAACTTCAATTATGCGGCACAATTCCCAAACTCAAAGC
AGTTGCACAAGTTCGGGGTGGCTCAACTCAACGTTACGGTTTCCCAACTCGCTGAGAAGTGGCTCGCATTGAAGGTGATG
GAAATAACCAAAAATGGCATTAGCCGATATCGGTCATACATCAAAATCTGTGCAGGGATCATTGGGGAGGAAAGGCTTGT
TTCATCTATTACCAATGAAATGGTTCTCAGCCTGCGGAAGGAGTTGCTTACTGGGTTTCAGATTGCAGGTGTCCACCAGA
AAACTCGGCAACTGAAAAAAGGTCGGTCTGTCAGAACGGTAAACGTCTACCTTTCTTGTTTTGCCGCGATGATGGAGTTC
GCTGTTGCGAATGGGTACATAGAGCGATCGCCTTTCGTCGGTATTTCACCGTTGAAAAAGAGCAAATCTGAGCCTGACCC
GTTAACGCGAGATGAGTATGCAAGACTTATGGAAGTTGCACCGTCACTTCAGGTGAAAAATATCTGGAAGCTGGCGGTAA
GCACAGGGATGCGGCACGGAGAAATTTGCGCGCTGGCATGGGAGGATATTGATCTGAAGGAATGGACAATTACGATCAGC
AGGAACATGGCCGTTGTTCACCACTTCACCCCGCCGAAAACTGAGAGCGGAAATCGCACTATTAAGCTGACGAATTCCGC
AATCGAAGCACTGAAGGAGCAAATGGCACTTACGAAGATGGGGAAAAAAATAAAGGTAGATGTCCACCTTCGCGAATTTG
GCAAAATCCGCAAAGATGATTGTACCTTCGTGTTCTCCCCTCGCCTTTCAGCTCGCAATGGGAAAGGAGGAGACTGGTAC
TCTCCTGGTGTCTTTAGCGGAACGTGGAACTTTGCATTGAAGAAAGCAGGTATCCGCCATCGGAAGGCATACGAGACCCG
GCACACTTTTGCATGTTGGGCGCTGAGTGCAGGAGCCAATCCGAATTTTGTCGCCAACCAGATGGGGCACACATCTTCAC
AGATGGTGTACAGCGTTTACGGGAAGTGGATGAGTGAAAACAATAGTAATCAGATGGACATTTTAAACGCAAGATTTACG
GGTGATGCCCCGTATATGCCCCGCGCCATATCACAGTGA

Upstream 100 bases:

>100_bases
TAATTTCCATAACTGTCTCAAAAGTGACCATAAACTCTCCTGAATCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAG
GCGTTGGGTGTGGATCACTA

Downstream 100 bases:

>100_bases
TGAGATTCTTTATTAACTTCAAACAGTTATTTAGCCCAACTCGGCTTATTCAATATGTGGTCTTGCCAATCAACCACTTC
GCTCTCACGTACTGCGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MHRSLHQGQRVRENLGVPDTAKNRRMAGELRESVRYTIKIGNFNYAAQFPNSKQLHKFGVAQLNVTVSQLAEKWLALKVM
EITKNGISRYRSYIKICAGIIGEERLVSSITNEMVLSLRKELLTGFQIAGVHQKTRQLKKGRSVRTVNVYLSCFAAMMEF
AVANGYIERSPFVGISPLKKSKSEPDPLTRDEYARLMEVAPSLQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITIS
RNMAVVHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDDCTFVFSPRLSARNGKGGDWY
SPGVFSGTWNFALKKAGIRHRKAYETRHTFACWALSAGANPNFVANQMGHTSSQMVYSVYGKWMSENNSNQMDILNARFT
GDAPYMPRAISQ

Sequences:

>Translated_412_residues
MHRSLHQGQRVRENLGVPDTAKNRRMAGELRESVRYTIKIGNFNYAAQFPNSKQLHKFGVAQLNVTVSQLAEKWLALKVM
EITKNGISRYRSYIKICAGIIGEERLVSSITNEMVLSLRKELLTGFQIAGVHQKTRQLKKGRSVRTVNVYLSCFAAMMEF
AVANGYIERSPFVGISPLKKSKSEPDPLTRDEYARLMEVAPSLQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITIS
RNMAVVHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDDCTFVFSPRLSARNGKGGDWY
SPGVFSGTWNFALKKAGIRHRKAYETRHTFACWALSAGANPNFVANQMGHTSSQMVYSVYGKWMSENNSNQMDILNARFT
GDAPYMPRAISQ
>Mature_412_residues
MHRSLHQGQRVRENLGVPDTAKNRRMAGELRESVRYTIKIGNFNYAAQFPNSKQLHKFGVAQLNVTVSQLAEKWLALKVM
EITKNGISRYRSYIKICAGIIGEERLVSSITNEMVLSLRKELLTGFQIAGVHQKTRQLKKGRSVRTVNVYLSCFAAMMEF
AVANGYIERSPFVGISPLKKSKSEPDPLTRDEYARLMEVAPSLQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITIS
RNMAVVHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDDCTFVFSPRLSARNGKGGDWY
SPGVFSGTWNFALKKAGIRHRKAYETRHTFACWALSAGANPNFVANQMGHTSSQMVYSVYGKWMSENNSNQMDILNARFT
GDAPYMPRAISQ

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=397, Percent_Identity=41.0579345088161, Blast_Score=317, Evalue=1e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46543; Mature: 46543

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRSLHQGQRVRENLGVPDTAKNRRMAGELRESVRYTIKIGNFNYAAQFPNSKQLHKFGV
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCEEEEEECCCCCHHHHHCH
AQLNVTVSQLAEKWLALKVMEITKNGISRYRSYIKICAGIIGEERLVSSITNEMVLSLRK
HHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
ELLTGFQIAGVHQKTRQLKKGRSVRTVNVYLSCFAAMMEFAVANGYIERSPFVGISPLKK
HHHCCCEEECHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
SKSEPDPLTRDEYARLMEVAPSLQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITIS
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEE
RNMAVVHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDD
CCEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCCCC
CTFVFSPRLSARNGKGGDWYSPGVFSGTWNFALKKAGIRHRKAYETRHTFACWALSAGAN
CCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCEEEEEEECCCC
PNFVANQMGHTSSQMVYSVYGKWMSENNSNQMDILNARFTGDAPYMPRAISQ
CCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHCCC
>Mature Secondary Structure
MHRSLHQGQRVRENLGVPDTAKNRRMAGELRESVRYTIKIGNFNYAAQFPNSKQLHKFGV
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCEEEEEECCCCCHHHHHCH
AQLNVTVSQLAEKWLALKVMEITKNGISRYRSYIKICAGIIGEERLVSSITNEMVLSLRK
HHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
ELLTGFQIAGVHQKTRQLKKGRSVRTVNVYLSCFAAMMEFAVANGYIERSPFVGISPLKK
HHHCCCEEECHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
SKSEPDPLTRDEYARLMEVAPSLQVKNIWKLAVSTGMRHGEICALAWEDIDLKEWTITIS
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEE
RNMAVVHHFTPPKTESGNRTIKLTNSAIEALKEQMALTKMGKKIKVDVHLREFGKIRKDD
CCEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCCCCC
CTFVFSPRLSARNGKGGDWYSPGVFSGTWNFALKKAGIRHRKAYETRHTFACWALSAGAN
CCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCEEEEEEECCCC
PNFVANQMGHTSSQMVYSVYGKWMSENNSNQMDILNARFTGDAPYMPRAISQ
CCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]