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The map label for this gene is potA [H]

Identifier: 108811674

GI number: 108811674

Start: 1713196

End: 1713537

Strand: Reverse

Name: potA [H]

Synonym: YPN_1511

Alternate gene names: 108811674

Gene position: 1713537-1713196 (Counterclockwise)

Preceding gene: 108811679

Following gene: 108811672

Centisome position: 37.79

GC content: 51.46

Gene sequence:

>342_bases
ATGGAAAAAAAGCATATGTCGAAACTGGTACTGGAGCAGGTGACCAAAACATTTGGCGATTTCTACGCCGCCAGGGAAAT
ATCTTTCTGCGCTGAAGAAGGCGAGTTCGTGACGTTGCTAGGGCCAAGTGGCTGCGGCAAAACGACACTGCTGAAGATGA
TCGGTGGCTTTCACCAGCCGGATAGCGGGCAGATCCTGATTGGGGGGAAATCGGTCAACAGCCTACCGCCAGATAAACGT
AATACCGCCATGTGCTTCCAGTCCTACGCCTTGTTCCCGCATCTCAACGTGTCGCATAACATCTGTTTCGGGCTGAAGCA
GAATAAATATCCTCCGGCATAG

Upstream 100 bases:

>100_bases
TATCATATTATTTTTATTTTTCACCTCAGTTTTGACTTTGATGATCTCTGTCACATTAGTTTAATGTTTAGTATGTAAAT
TTAATATTCATCTTCCTACG

Downstream 100 bases:

>100_bases
CCGGAGGTTTTTCATATGCGCCTATAAGGCTCTGTTACCAGCCGCGCCCTAACAGGCGCATCGCGATCTGACATTTGCAT
CTATGGATTACTTACGGCCC

Product: ABC transporter, ATP-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MEKKHMSKLVLEQVTKTFGDFYAAREISFCAEEGEFVTLLGPSGCGKTTLLKMIGGFHQPDSGQILIGGKSVNSLPPDKR
NTAMCFQSYALFPHLNVSHNICFGLKQNKYPPA

Sequences:

>Translated_113_residues
MEKKHMSKLVLEQVTKTFGDFYAAREISFCAEEGEFVTLLGPSGCGKTTLLKMIGGFHQPDSGQILIGGKSVNSLPPDKR
NTAMCFQSYALFPHLNVSHNICFGLKQNKYPPA
>Mature_113_residues
MEKKHMSKLVLEQVTKTFGDFYAAREISFCAEEGEFVTLLGPSGCGKTTLLKMIGGFHQPDSGQILIGGKSVNSLPPDKR
NTAMCFQSYALFPHLNVSHNICFGLKQNKYPPA

Specific function: Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system [H]

COG id: COG3842

COG function: function code E; ABC-type spermidine/putrescine transport systems, ATPase components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1790467, Length=101, Percent_Identity=49.5049504950495, Blast_Score=114, Evalue=2e-27,
Organism=Escherichia coli, GI87081791, Length=105, Percent_Identity=48.5714285714286, Blast_Score=113, Evalue=3e-27,
Organism=Escherichia coli, GI87081709, Length=103, Percent_Identity=45.6310679611651, Blast_Score=102, Evalue=9e-24,
Organism=Escherichia coli, GI1787370, Length=109, Percent_Identity=43.1192660550459, Blast_Score=99, Evalue=8e-23,
Organism=Escherichia coli, GI1787712, Length=94, Percent_Identity=44.6808510638298, Blast_Score=97, Evalue=3e-22,
Organism=Escherichia coli, GI87082267, Length=102, Percent_Identity=41.1764705882353, Blast_Score=94, Evalue=3e-21,
Organism=Escherichia coli, GI1786253, Length=78, Percent_Identity=48.7179487179487, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1788761, Length=95, Percent_Identity=43.1578947368421, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI1789586, Length=118, Percent_Identity=33.8983050847458, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1788450, Length=102, Percent_Identity=38.2352941176471, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1787029, Length=95, Percent_Identity=37.8947368421053, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1786563, Length=97, Percent_Identity=39.1752577319588, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1789032, Length=101, Percent_Identity=32.6732673267327, Blast_Score=69, Evalue=8e-14,
Organism=Escherichia coli, GI1789672, Length=96, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-13,
Organism=Escherichia coli, GI1787089, Length=92, Percent_Identity=38.0434782608696, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI87081782, Length=93, Percent_Identity=36.5591397849462, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1786698, Length=106, Percent_Identity=35.8490566037736, Blast_Score=64, Evalue=3e-12,
Organism=Escherichia coli, GI1788225, Length=109, Percent_Identity=33.9449541284404, Blast_Score=62, Evalue=8e-12,
Organism=Escherichia coli, GI1786872, Length=111, Percent_Identity=34.2342342342342, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR017879
- InterPro:   IPR005893
- InterPro:   IPR013611 [H]

Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]

EC number: =3.6.3.31 [H]

Molecular weight: Translated: 12440; Mature: 12440

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKHMSKLVLEQVTKTFGDFYAAREISFCAEEGEFVTLLGPSGCGKTTLLKMIGGFHQP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCC
DSGQILIGGKSVNSLPPDKRNTAMCFQSYALFPHLNVSHNICFGLKQNKYPPA
CCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MEKKHMSKLVLEQVTKTFGDFYAAREISFCAEEGEFVTLLGPSGCGKTTLLKMIGGFHQP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCC
DSGQILIGGKSVNSLPPDKRNTAMCFQSYALFPHLNVSHNICFGLKQNKYPPA
CCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA