| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108811669
Identifier: 108811669
GI number: 108811669
Start: 1708947
End: 1710029
Strand: Reverse
Name: 108811669
Synonym: YPN_1506
Alternate gene names: NA
Gene position: 1710029-1708947 (Counterclockwise)
Preceding gene: 108811670
Following gene: 108811668
Centisome position: 37.71
GC content: 51.06
Gene sequence:
>1083_bases ATGAAAAAAACACTGATAACGCTAATGAGCGGGCTGTTATTCAGTTCGCTAACACTCGCAGCCCAGACCAGCGACTGGGA CTCTGTGGTTGCGCAGGCAAAAAAAGAAGGCAGCGTGACTTTTAACGTTTGGTATCTACAACCACAGTGGCGCAGTTTTG TGAAAAATTTTGAACAAAAGTACGACATCAAGGTGCGTATTCCAGAAGGCAGCATTGACGGCAATATGAACAAATTGCTG GCAGAGACACGCCGGGAGCAAGGGAAGATCGATGTCATTGCCCTCTCTATCGCACAATTACCGATCACGATGGGCGCGAA ATCACTGGCTAAAGTGGATGATTTACCGGGTTATCAGGATGCGTATCACCAGTTACAGAACGTCGATACCCAAGGTTACG CCGTAGCATTCTGGGGCAACCAGACCGGTTTTGCCTACGATCCCCAACAGATGGGTGATCGACCATTGCCACAGACCATG GAGGAACTCCAACGTTTTATCGACGCCAATCCGAAGCGGTTCGGTTATAACGATCCGAACAACGGGGGGGCGGGGGAAGC CTTTATCCAACGCATCGTCACCACGCTGAGCGGCGACTTTAGCAGCGAGTCTGACACTGTTGACCCAACGGTAATAAAAA ACTGGCAGAAAGGTTGGCAGTGGTTTGCGTCCAATAATAACAATATTACCCGCACGGCGTCCGGTGCCGATAGCCTGACA CGCCTCAACGATGGCGAACTGATGCTGACACCTGCCTGGGAAGACCACCTTTCCGGCTTACAAAAGACCGGCGCAATCAC CTCCAGGTTGAAATTCTATGTGCCTGAGTTTGGTATGCCCGGCGGTGGCAATATTGCCAGTATCGCAGCCAACAGCCCGC ACCCGGCGGCCTCCAGAGTGTTCCTAAACTGGCTGATTCAGGCAGATACCCAGAAAGCGCTGAACGAGGCGTTCGGTTCC ACCCCAATGAACAAGCAACTGAATGCTGATGTAAAACAGCCTGACACACCCGTTCAGTTTTACGGTAAGGCGTACAGTAT GCAGATGAAAAAAGAGTTTGCTCGTCAGGTAATGACACGATAA
Upstream 100 bases:
>100_bases ATCCCCAATGTCATTTTGATGATCATCATTGAGAAGCTTTTGAAGGGTAATTATCTGTCACAGTCCACCGGGAAAGCCTG ATTTTACAGGAGATAATCAC
Downstream 100 bases:
>100_bases ATCTGGCGACACAAAAAGGCAGAACGCAGAAGGTTCATGGTTAGGAAATTTGCTGATATTTTTTGTTCTGTTTCCTTGGC GGGTACAGTCGCTGTATTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 360; Mature: 360
Protein sequence:
>360_residues MKKTLITLMSGLLFSSLTLAAQTSDWDSVVAQAKKEGSVTFNVWYLQPQWRSFVKNFEQKYDIKVRIPEGSIDGNMNKLL AETRREQGKIDVIALSIAQLPITMGAKSLAKVDDLPGYQDAYHQLQNVDTQGYAVAFWGNQTGFAYDPQQMGDRPLPQTM EELQRFIDANPKRFGYNDPNNGGAGEAFIQRIVTTLSGDFSSESDTVDPTVIKNWQKGWQWFASNNNNITRTASGADSLT RLNDGELMLTPAWEDHLSGLQKTGAITSRLKFYVPEFGMPGGGNIASIAANSPHPAASRVFLNWLIQADTQKALNEAFGS TPMNKQLNADVKQPDTPVQFYGKAYSMQMKKEFARQVMTR
Sequences:
>Translated_360_residues MKKTLITLMSGLLFSSLTLAAQTSDWDSVVAQAKKEGSVTFNVWYLQPQWRSFVKNFEQKYDIKVRIPEGSIDGNMNKLL AETRREQGKIDVIALSIAQLPITMGAKSLAKVDDLPGYQDAYHQLQNVDTQGYAVAFWGNQTGFAYDPQQMGDRPLPQTM EELQRFIDANPKRFGYNDPNNGGAGEAFIQRIVTTLSGDFSSESDTVDPTVIKNWQKGWQWFASNNNNITRTASGADSLT RLNDGELMLTPAWEDHLSGLQKTGAITSRLKFYVPEFGMPGGGNIASIAANSPHPAASRVFLNWLIQADTQKALNEAFGS TPMNKQLNADVKQPDTPVQFYGKAYSMQMKKEFARQVMTR >Mature_360_residues MKKTLITLMSGLLFSSLTLAAQTSDWDSVVAQAKKEGSVTFNVWYLQPQWRSFVKNFEQKYDIKVRIPEGSIDGNMNKLL AETRREQGKIDVIALSIAQLPITMGAKSLAKVDDLPGYQDAYHQLQNVDTQGYAVAFWGNQTGFAYDPQQMGDRPLPQTM EELQRFIDANPKRFGYNDPNNGGAGEAFIQRIVTTLSGDFSSESDTVDPTVIKNWQKGWQWFASNNNNITRTASGADSLT RLNDGELMLTPAWEDHLSGLQKTGAITSRLKFYVPEFGMPGGGNIASIAANSPHPAASRVFLNWLIQADTQKALNEAFGS TPMNKQLNADVKQPDTPVQFYGKAYSMQMKKEFARQVMTR
Specific function: Unknown
COG id: COG4134
COG function: function code R; ABC-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40086; Mature: 40086
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTLITLMSGLLFSSLTLAAQTSDWDSVVAQAKKEGSVTFNVWYLQPQWRSFVKNFEQK CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHH YDIKVRIPEGSIDGNMNKLLAETRREQGKIDVIALSIAQLPITMGAKSLAKVDDLPGYQD CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHCCHHHCHHHHHHHHCCCCHHH AYHQLQNVDTQGYAVAFWGNQTGFAYDPQQMGDRPLPQTMEELQRFIDANPKRFGYNDPN HHHHHHCCCCCCEEEEEECCCCCCEECHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC NGGAGEAFIQRIVTTLSGDFSSESDTVDPTVIKNWQKGWQWFASNNNNITRTASGADSLT CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCEEEECCCCHHHH RLNDGELMLTPAWEDHLSGLQKTGAITSRLKFYVPEFGMPGGGNIASIAANSPHPAASRV CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECCCCCCHHHHH FLNWLIQADTQKALNEAFGSTPMNKQLNADVKQPDTPVQFYGKAYSMQMKKEFARQVMTR HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKTLITLMSGLLFSSLTLAAQTSDWDSVVAQAKKEGSVTFNVWYLQPQWRSFVKNFEQK CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHH YDIKVRIPEGSIDGNMNKLLAETRREQGKIDVIALSIAQLPITMGAKSLAKVDDLPGYQD CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHCCHHHCHHHHHHHHCCCCHHH AYHQLQNVDTQGYAVAFWGNQTGFAYDPQQMGDRPLPQTMEELQRFIDANPKRFGYNDPN HHHHHHCCCCCCEEEEEECCCCCCEECHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC NGGAGEAFIQRIVTTLSGDFSSESDTVDPTVIKNWQKGWQWFASNNNNITRTASGADSLT CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCEEEECCCCHHHH RLNDGELMLTPAWEDHLSGLQKTGAITSRLKFYVPEFGMPGGGNIASIAANSPHPAASRV CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECCCCCCHHHHH FLNWLIQADTQKALNEAFGSTPMNKQLNADVKQPDTPVQFYGKAYSMQMKKEFARQVMTR HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA