| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108811648
Identifier: 108811648
GI number: 108811648
Start: 1688878
End: 1689720
Strand: Reverse
Name: 108811648
Synonym: YPN_1485
Alternate gene names: NA
Gene position: 1689720-1688878 (Counterclockwise)
Preceding gene: 108811652
Following gene: 108811644
Centisome position: 37.26
GC content: 46.03
Gene sequence:
>843_bases ATGCGTTTCTTTTTTCTGTTTACACTGGCTGGAGTGATTTCTGTTAGTGCTGTAACGAATTCACACGCAGCCAATAGTGC CGAACGTCGCTGTGGCTGGTTTGAAAACCCGACTCCAGCTAATGCTACGCTGACTGATCGTGATGGCATGTGGGAAATCG GTACTCAAGGCGGCTATCAGGCGAAAGGTGACTGGCCTGGATTTAGTCCTGCCCAATGGGTTCGTACCGGGAATGGAAAC TATGGTTATGGCTGTGCCTGCATCACTGCGGATACAGACCCCACGACACAGCGCATGAATAATCTGACTAAAGCAACGGC TCGTCCTCTAAGTGCCTGCCGTACAGATAAATCACTCAAAGAACCAGAAAATCCGTTAGCAGAGATGCGACAGATAGCCT TATATCAGGGCAATGGTTTCAGCTTCAGTTATCCAAGCACTTGGTCAGTCAAAAAAGAAAAGCAATGCGTCAGTCTCAAT CAGCCAGAACGGGTGACTGAGGAAGAATACACGTTAAATATTTGTGTTCAGCATGGCACTCTGGAACAGGCGACAGACAG TATGATTTTTTATAACGATAACGGTGTCTGGATGCGGGAAGCGGGAATGGATGCCCCTAGCCCTGTCGATATAATTAAAG GGCCAGGCTGGAAAGGGATGCAGACTACGCAGACGTGTGGCGTCAGTGATGAAGAAACTGGTTTTCATGCCGCGGGTGGC ACCTGTTTTATGGCAATTGTTTATGATGCTAAAACACAATTATTGTTTGATACGGTTGGTTTTTACCAGAATTTTGATGT CATCAACATGATTGTTCAGTCTGTTAAATTTACCGAAAAATAA
Upstream 100 bases:
>100_bases CTGCTGTCTCATGAAGTTTCACTGAATTTCATAAAAATCGAAAAAACCGATAAAATCCACGTGCTTGCGTGGATTTTTTG TTTTCATATAAGGATATTTC
Downstream 100 bases:
>100_bases TGTTTATACTGCAATAATAAGCCGTGAAAGTTTTTTTTTGTTTTCATAACATCTTAGGTGGTAAGCGAATCGCCACGCGG CATGAGTAAAAAACTTAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MRFFFLFTLAGVISVSAVTNSHAANSAERRCGWFENPTPANATLTDRDGMWEIGTQGGYQAKGDWPGFSPAQWVRTGNGN YGYGCACITADTDPTTQRMNNLTKATARPLSACRTDKSLKEPENPLAEMRQIALYQGNGFSFSYPSTWSVKKEKQCVSLN QPERVTEEEYTLNICVQHGTLEQATDSMIFYNDNGVWMREAGMDAPSPVDIIKGPGWKGMQTTQTCGVSDEETGFHAAGG TCFMAIVYDAKTQLLFDTVGFYQNFDVINMIVQSVKFTEK
Sequences:
>Translated_280_residues MRFFFLFTLAGVISVSAVTNSHAANSAERRCGWFENPTPANATLTDRDGMWEIGTQGGYQAKGDWPGFSPAQWVRTGNGN YGYGCACITADTDPTTQRMNNLTKATARPLSACRTDKSLKEPENPLAEMRQIALYQGNGFSFSYPSTWSVKKEKQCVSLN QPERVTEEEYTLNICVQHGTLEQATDSMIFYNDNGVWMREAGMDAPSPVDIIKGPGWKGMQTTQTCGVSDEETGFHAAGG TCFMAIVYDAKTQLLFDTVGFYQNFDVINMIVQSVKFTEK >Mature_280_residues MRFFFLFTLAGVISVSAVTNSHAANSAERRCGWFENPTPANATLTDRDGMWEIGTQGGYQAKGDWPGFSPAQWVRTGNGN YGYGCACITADTDPTTQRMNNLTKATARPLSACRTDKSLKEPENPLAEMRQIALYQGNGFSFSYPSTWSVKKEKQCVSLN QPERVTEEEYTLNICVQHGTLEQATDSMIFYNDNGVWMREAGMDAPSPVDIIKGPGWKGMQTTQTCGVSDEETGFHAAGG TCFMAIVYDAKTQLLFDTVGFYQNFDVINMIVQSVKFTEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30976; Mature: 30976
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFFFLFTLAGVISVSAVTNSHAANSAERRCGWFENPTPANATLTDRDGMWEIGTQGGYQ CEEEHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCEEECCCCCCC AKGDWPGFSPAQWVRTGNGNYGYGCACITADTDPTTQRMNNLTKATARPLSACRTDKSLK CCCCCCCCCHHHHEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHC EPENPLAEMRQIALYQGNGFSFSYPSTWSVKKEKQCVSLNQPERVTEEEYTLNICVQHGT CCCCHHHHHHHEEEEECCCEEECCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCC LEQATDSMIFYNDNGVWMREAGMDAPSPVDIIKGPGWKGMQTTQTCGVSDEETGFHAAGG HHHCCCCEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCCCEECCCC TCFMAIVYDAKTQLLFDTVGFYQNFDVINMIVQSVKFTEK EEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MRFFFLFTLAGVISVSAVTNSHAANSAERRCGWFENPTPANATLTDRDGMWEIGTQGGYQ CEEEHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCEEECCCCCCC AKGDWPGFSPAQWVRTGNGNYGYGCACITADTDPTTQRMNNLTKATARPLSACRTDKSLK CCCCCCCCCHHHHEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHC EPENPLAEMRQIALYQGNGFSFSYPSTWSVKKEKQCVSLNQPERVTEEEYTLNICVQHGT CCCCHHHHHHHEEEEECCCEEECCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEEEEECCC LEQATDSMIFYNDNGVWMREAGMDAPSPVDIIKGPGWKGMQTTQTCGVSDEETGFHAAGG HHHCCCCEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCCCEECCCC TCFMAIVYDAKTQLLFDTVGFYQNFDVINMIVQSVKFTEK EEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA