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The map label for this gene is yafK [H]

Identifier: 108811018

GI number: 108811018

Start: 997838

End: 998500

Strand: Reverse

Name: yafK [H]

Synonym: YPN_0853

Alternate gene names: 108811018

Gene position: 998500-997838 (Counterclockwise)

Preceding gene: 108811019

Following gene: 108811015

Centisome position: 22.02

GC content: 44.95

Gene sequence:

>663_bases
GTGGCAGTATCCAAAGAGCTAAAACAGCAACTACTGGGGTCATCGGTTTATATTCAGATTTTCAAAGAAGAGCGTGTCTT
GGAGTTGTATGCCAAGCTACAAGGCGAGTATCGTTTAGTGCAAAGCTATCCTATTTGTGAATTCTCAGGAGGGCTTGGGC
CGAAACGCCGTGAAGGGGATTTCAAAAGCCCAGAAGGCTTTTACCGCATTAATACGCGCCATTTAAAACCCGACAGTCAG
TTTTATCGAGCCATTAATATCGGTTTTCCTAATGATTATGATAAGTCGCAAGGGTATTCAGGGAAATATCTGATGATCCA
CGGTGCTTGTAAATCAATTGGCTGTTATGCAATGACCGATGCCTATATGGATGAGATATTTAACTACGTGAGAACCGCGT
TTATCTTTGGTCAGGAAAAAGTGGATATCAGTATCTACCCCTTCCGTATGACAGAACAAAATATACAACGCCACCGTAAT
TCGTCCTATTCCAACTTCTGGCGTCAACTGCAACCGGGATATACCTATTTTGCCAAAAACCGGATGCCACCGCCCGTTTC
AGTCAGCAACGGGCAGTATGTGTTAAGCCCGCCGCCGCTCACTAGCACGCCAACATCGCAATTGGCACTAATTAAAACCG
ACCCGCTCACCAAGACAGAATAA

Upstream 100 bases:

>100_bases
AAGTGGGAATCATTATGGGCAAAATCGCGCTGTTATTTGCGATGATAATTTGCTTGCCTGCGGCATCCTTCACCAGCTCA
GCCAGTGAGCCAGTGAGCCA

Downstream 100 bases:

>100_bases
AGCAAATTCACCTGGTGCAATTTTGTGCCAGGTTTCATTACCGGTCAGTGGCTGGGTAGCAATTACCGTGACCACATCTT
TAGGTGTGGTCTGCTGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAVSKELKQQLLGSSVYIQIFKEERVLELYAKLQGEYRLVQSYPICEFSGGLGPKRREGDFKSPEGFYRINTRHLKPDSQ
FYRAINIGFPNDYDKSQGYSGKYLMIHGACKSIGCYAMTDAYMDEIFNYVRTAFIFGQEKVDISIYPFRMTEQNIQRHRN
SSYSNFWRQLQPGYTYFAKNRMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTDPLTKTE

Sequences:

>Translated_220_residues
MAVSKELKQQLLGSSVYIQIFKEERVLELYAKLQGEYRLVQSYPICEFSGGLGPKRREGDFKSPEGFYRINTRHLKPDSQ
FYRAINIGFPNDYDKSQGYSGKYLMIHGACKSIGCYAMTDAYMDEIFNYVRTAFIFGQEKVDISIYPFRMTEQNIQRHRN
SSYSNFWRQLQPGYTYFAKNRMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTDPLTKTE
>Mature_219_residues
AVSKELKQQLLGSSVYIQIFKEERVLELYAKLQGEYRLVQSYPICEFSGGLGPKRREGDFKSPEGFYRINTRHLKPDSQF
YRAINIGFPNDYDKSQGYSGKYLMIHGACKSIGCYAMTDAYMDEIFNYVRTAFIFGQEKVDISIYPFRMTEQNIQRHRNS
SYSNFWRQLQPGYTYFAKNRMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTDPLTKTE

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=216, Percent_Identity=61.1111111111111, Blast_Score=281, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 25374; Mature: 25243

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSKELKQQLLGSSVYIQIFKEERVLELYAKLQGEYRLVQSYPICEFSGGLGPKRREGD
CCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCCEEEEECCCCEEECCCCCCCCCCCC
FKSPEGFYRINTRHLKPDSQFYRAINIGFPNDYDKSQGYSGKYLMIHGACKSIGCYAMTD
CCCCCCEEEEECEECCCCHHEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
AYMDEIFNYVRTAFIFGQEKVDISIYPFRMTEQNIQRHRNSSYSNFWRQLQPGYTYFAKN
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHCCCCHHHHHHHCCCCCEEEECC
RMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTDPLTKTE
CCCCCEEECCCEEEECCCCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
AVSKELKQQLLGSSVYIQIFKEERVLELYAKLQGEYRLVQSYPICEFSGGLGPKRREGD
CCHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCCEEEEECCCCEEECCCCCCCCCCCC
FKSPEGFYRINTRHLKPDSQFYRAINIGFPNDYDKSQGYSGKYLMIHGACKSIGCYAMTD
CCCCCCEEEEECEECCCCHHEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
AYMDEIFNYVRTAFIFGQEKVDISIYPFRMTEQNIQRHRNSSYSNFWRQLQPGYTYFAKN
HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHHCCCCHHHHHHHCCCCCEEEECC
RMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTDPLTKTE
CCCCCEEECCCEEEECCCCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]