Click here to switch to the map view.

The map label for this gene is gspD [C]

Identifier: 108810715

GI number: 108810715

Start: 663591

End: 664040

Strand: Reverse

Name: gspD [C]

Synonym: YPN_0550

Alternate gene names: 108810715

Gene position: 664040-663591 (Counterclockwise)

Preceding gene: 108810716

Following gene: 108810714

Centisome position: 14.64

GC content: 43.33

Gene sequence:

>450_bases
GTGAATGAGAAGAAACGTATCCGTGTCATGTTGGGTGAAGAGGTCAGCAGTATTGATAAGGTATTTAATCTTAGGGGTGG
GGACTCCTACCCTTCATTACGCATACGTAAGGCAAATACCACAGTAGAGTTAGGCGATGGTGAAAGTTTTATTCTCGGTG
GCCTGATCAGTAGTACTGAACGGGAGTCGCTTAAAAAAATTCCGTTTATTGGTGATATCCCCCTACTGGGTGCGTTATTC
CGTAATGCACAAACTCAGAGGAATCAGAGTGAGCTGGTGGTTGTCGCTACCGTAAACCTGGTGAAACCCGTATCAGCAAG
GCAGATTGAGCTACCTGATTTTATGCATACCTCTACGGTAGAACGTTTTTTCAATCTGACCAATATCAAAGACGCTAAGC
GTAGAAAGCAGGCGAAAGAATTTCTGCAAAAAGGAGGTTTTATAAAATGA

Upstream 100 bases:

>100_bases
CCTTCTTGGTCGGCGGTGAAATACCGATTGTTAGCACCAATCAGAATGGTATTAGTGTCGAATTAAAGAGTTTGGCATTA
AGTTAAACATTGGTGCCAAA

Downstream 100 bases:

>100_bases
AATGGATATTCATCATAATGGCTATTCTCTTTTCTACTAGAGGCATTACTGCGTTCACAATTAAACCGTCCGCTAATGAG
TACTCTTATGTATTAATAGG

Product: outer membrane secretin family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDIPLLGALF
RNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVERFFNLTNIKDAKRRKQAKEFLQKGGFIK

Sequences:

>Translated_149_residues
MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDIPLLGALF
RNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVERFFNLTNIKDAKRRKQAKEFLQKGGFIK
>Mature_149_residues
MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDIPLLGALF
RNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTVERFFNLTNIKDAKRRKQAKEFLQKGGFIK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 16780; Mature: 16780

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE
CCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCCEEEEHHHHCCHH
RESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTV
HHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECHHCCCCCCEEECCCHHHHHHH
ERFFNLTNIKDAKRRKQAKEFLQKGGFIK
HHHHHHCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE
CCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCCEEEEHHHHCCHH
RESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPDFMHTSTV
HHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECHHCCCCCCEEECCCHHHHHHH
ERFFNLTNIKDAKRRKQAKEFLQKGGFIK
HHHHHHCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]