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The map label for this gene is yfiB [H]

Identifier: 108810484

GI number: 108810484

Start: 389123

End: 389620

Strand: Reverse

Name: yfiB [H]

Synonym: YPN_0319

Alternate gene names: 108810484

Gene position: 389620-389123 (Counterclockwise)

Preceding gene: 108810485

Following gene: 108810483

Centisome position: 8.59

GC content: 47.39

Gene sequence:

>498_bases
ATGCAAAACAAGCGTTTAATACAACGTATTTGGGTCAGTTTCCTGGCAATGGGTTTGATGCTATTAGTGGGGTGTCAGGC
TAAACCACAAGGGCTAACACCTGATCAAATCGCCGCATTGCAAGAGCAGGGGTTTAAATTAACCGATAATGGCTGGGAAT
TTGGCCTGGCAAATAAAGTGCTATTCGACAGTGATGTGAAAAAATTAAATTCTGAGGGTATGCAAACCGTACAAAAGATT
GGCCGGATATTGTCAGATGTGGGGATTAAGCATATGCGGGTTGATGGTCATACCGACTCCGTCGGGAAGGATGACTATAA
TCAACAATTATCCTACCAGCGCGCCTTAGCCGTAGCCGATACTCTCGCTACCGTCGGTATTCCAAAGAGTAATATTGATG
TTCGTGGCCGTGGCAAGTTAGAGCCCGTCGCGGATAACCGCACCAGTAAAGGCCGAGCCGAAAACCGCCGCGTCGCCATT
ATTATCACCGCGTCCTAA

Upstream 100 bases:

>100_bases
TGTATCAGGCGAAGAAAAACTTCCGGTCTGGCAAGCGTATTTTTGCCTATCAGCCGAATACGACTAACACAGAAAGTTTA
GGATAGGTGACATGCAGAAA

Downstream 100 bases:

>100_bases
CGTCCTTTATTTACCGGTTTGCGGCTGTAAACCGGTTTCTGCCTTTATTCTGCTCAGATATAGACCCAGAGCCATTGGCA
ATGCAGCTTAGCTGCCAGGA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLANKVLFDSDVKKLNSEGMQTVQKI
GRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRRVAI
IITAS

Sequences:

>Translated_165_residues
MQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLANKVLFDSDVKKLNSEGMQTVQKI
GRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRRVAI
IITAS
>Mature_165_residues
MQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLANKVLFDSDVKKLNSEGMQTVQKI
GRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVADTLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRRVAI
IITAS

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=154, Percent_Identity=46.1038961038961, Blast_Score=141, Evalue=2e-35,
Organism=Escherichia coli, GI48994946, Length=110, Percent_Identity=38.1818181818182, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1787191, Length=96, Percent_Identity=38.5416666666667, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18177; Mature: 18177

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLANKV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCCCEEECCCCCH
LFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVAD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
TLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRRVAIIITAS
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MQNKRLIQRIWVSFLAMGLMLLVGCQAKPQGLTPDQIAALQEQGFKLTDNGWEFGLANKV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCCCEEECCCCCH
LFDSDVKKLNSEGMQTVQKIGRILSDVGIKHMRVDGHTDSVGKDDYNQQLSYQRALAVAD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
TLATVGIPKSNIDVRGRGKLEPVADNRTSKGRAENRRVAIIITAS
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6357787; 9205837; 9278503; 6298574 [H]