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The map label for this gene is yifB [H]

Identifier: 108810231

GI number: 108810231

Start: 96530

End: 98053

Strand: Reverse

Name: yifB [H]

Synonym: YPN_0065

Alternate gene names: 108810231

Gene position: 98053-96530 (Counterclockwise)

Preceding gene: 108810237

Following gene: 108810229

Centisome position: 2.16

GC content: 53.41

Gene sequence:

>1524_bases
ATGTCACTGGCAACCATTCATACTCGCGCAACATTGGGCATTCAAGCCCCTCCTGTCGCGGTAGAAGTTCATATCAGCAA
TGGATTACCCGGATTGATATTGGTCGGCTTACCTGAAACAACGGTCAAAGAAGCACGGGATCGGGTTCGTAGCGCATTAA
TTAACAGCGGTTTTAATTTTCCCGCCAAGCGGATCACCGTCAGCCTGGCACCGGCAGATTTACCCAAAGAAGGCGGGCGC
TATGATCTCCCCATTGCTTTAGCCATCTTGGCCGCCTCAGAGCAGATCCCTGCGGATAAGTTAGCGCACTATGAGTTCTT
GGGTGAATTAGCCCTATCCGGCGCGTTAAGGCGCGTTAGCGGCGCAATTCCAGCAGCACTCACCTGTAGCGAAGCTAACC
GTCAGTTAATCCTTCCCACCGCTAATGGTCTTGAAATTGGTCTAATCCCACAAGGCAACTCCTGGGTCGCAGACCATTTA
TTAGCGGTATGCGGTTTCTTACAAGGTGAAAACCCCCTCGCACAGGGCCAGCCCTTCGAACCGGCCCCTTCACCGGATAA
CCACCTTGATTTACACGACATCATTGGTCAATCGCAGGCTAAACGTGCGTTAGAAATCGCGGCGGCAGGTGGTCATAACC
TGCTGTTACTCGGGCCACCAGGTACCGGTAAAACGATGCTGGCAACCCGCCTAACCGGGTTATTGCCTCCGCTGACCGAT
CAGGAGGCGTTAGAAGCAGCGGCGATCACCGGGTTGCTGCATAGCAACGCACTGCCAACACAATGGCGTTGCCGGGCCTT
TCGTGCCCCACACCATAGCGCATCGATGGCAGCGCTGATTGGCGGCGGCTCCATCCCCCGCCCCGGTGAGATATCACTGG
CCCATAACGGTGTGTTATTTCTCGATGAACTGCCTGAATTTGAACGCCGGGTACTGGATTCACTGCGCGAACCGTTGGAA
TCTGGCGAAATTATTATCTCCCGCGCGGCAGCCAAAATCTGTTTTCCAGCCAAAGTGCAACTTATCGCGGCGATGAACCC
TAGCCCCAGCGGCCACTACCAAGGCGTTCATAACCGCACACCGCCACAGCAAATTTTGCGCTATCTGGCCAAGTTGTCCG
GGCCATTTCTCGATAGATTCGATTTATCGATAGAAGTGCCATTACTGCCAGCCGGTATGCTGGGTGCGCAGAAAAATCAG
GGGGAGAGTAGCGCTACAGTCAAGCAGCGAGTGTTACAGGCCAGACAAAGGCAAATGGACCGGGCGGGGAAGATCAATAC
GCAGCTCACTAGCCAAGAGGTAGCAGAGTTTTGTTATTTAGCACCTGAGGATGCCGCGTTTCTCGAGCAGGTTTTACTGA
CACTCGGCCTGTCAGTACGTGCCTGGCACCATATTTTGAAAGTGGCGCGAACCATTGCCGATTTAGCGCAAGAAAAGACC
ATCCAAAAAAGTCATCTTTCAGAGGCGCTGAGCTATCGCTGTATGGATCGCCAGCTATTGCAGTTGCACAAAAGCCTGAT
GTAA

Upstream 100 bases:

>100_bases
ATTTAGGTTCTCATTTATCGCCACACTGAGCACATCAAAATAAAAACATCCCACGGAGCAGTATCGTGCGTCAGGACGCA
TGACGGCAAAGGAAAGCATA

Downstream 100 bases:

>100_bases
CAAAGGGGGCCAAAGCCCCCTAATACTCAACTAACCACCGATAGGTAAACGAATCCCGATGAGCTTACACCAGTAAGTGA
TTCGGGTGAGTGCACGCAGC

Product: magnesium chelatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVSGAIPAALTCSEANRQLILPTANGLEIGLIPQGNSWVADHL
LAVCGFLQGENPLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQ
GESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
IQKSHLSEALSYRCMDRQLLQLHKSLM

Sequences:

>Translated_507_residues
MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVSGAIPAALTCSEANRQLILPTANGLEIGLIPQGNSWVADHL
LAVCGFLQGENPLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQ
GESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
IQKSHLSEALSYRCMDRQLLQLHKSLM
>Mature_506_residues
SLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGRY
DLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVSGAIPAALTCSEANRQLILPTANGLEIGLIPQGNSWVADHLL
AVCGFLQGENPLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTDQ
EALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLES
GEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQG
ESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKTI
QKSHLSEALSYRCMDRQLLQLHKSLM

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=506, Percent_Identity=63.2411067193676, Blast_Score=655, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 54507; Mature: 54376

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS50051 MCM_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNF
CCCEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
PAKRITVSLAPADLPKEGGRYDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVS
CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GAIPAALTCSEANRQLILPTANGLEIGLIPQGNSWVADHLLAVCGFLQGENPLAQGQPFE
CCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
PAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
CCCCCCCCCCHHHHHCCHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLF
HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEE
LDELPEFERRVLDSLREPLESGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRT
ECCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCC
PPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQGESSATVKQRVLQARQRQMD
CHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHH
RAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
HCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IQKSHLSEALSYRCMDRQLLQLHKSLM
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNF
CCEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCC
PAKRITVSLAPADLPKEGGRYDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVS
CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GAIPAALTCSEANRQLILPTANGLEIGLIPQGNSWVADHLLAVCGFLQGENPLAQGQPFE
CCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
PAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
CCCCCCCCCCHHHHHCCHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLF
HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEECCCEEE
LDELPEFERRVLDSLREPLESGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRT
ECCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCC
PPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQGESSATVKQRVLQARQRQMD
CHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHH
RAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
HCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IQKSHLSEALSYRCMDRQLLQLHKSLM
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1995430; 1379743; 9278503 [H]