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The map label for this gene is osmF [H]

Identifier: 108801930

GI number: 108801930

Start: 5257041

End: 5257985

Strand: Reverse

Name: osmF [H]

Synonym: Mmcs_4967

Alternate gene names: 108801930

Gene position: 5257985-5257041 (Counterclockwise)

Preceding gene: 108801932

Following gene: 108801929

Centisome position: 92.16

GC content: 65.08

Gene sequence:

>945_bases
ATGGCGAGCACGCGCAGACGCACCCGATGGGCGGCCCTGCTGGTCTCTGTGACGTTGGCACTGACCGCGTGCGGCAGTTC
GAACCCGCTCGGGGGCGGTGAGATCTCGGGCGACCTCAAGACGGTCACCGTCGGGTCGGCCGACTTCACCGAGTCCAAGA
TCATCGCCGAGATCTACGCTCAGGCGTTGGAGGCCAACGGTTTCGACATCAGCAGGCAGTTCGGCATCGGCAGCCGCGAG
ACGTACATCCCTGCCGTACAGGACCACTCGATCGATCTGATCCCCGAATACACCGGGAACCTGTTGCAGTACTTCGACGA
AGAGACCGACGTGACGACCCCGGACGCGGTGATCCTCGGTCTGCTGCGCGCGCTGCCCGGTGACCTGTCGATCCTGTATC
CCTCACCGGCCGAGGACAAGGACACCGTCGCGGTGTCGGCCGAGACGGCACAGCGGTGGAATCTCAAGACGATCGGCGAT
CTGGCGGCCCACTCACCGGAGGTGAAGTTCGGCGGGCCGTCGGAGTTCCTCAACCGCACCGAGGGCCTGCCGGGGCTCAA
GGAGAAGTACGGTCTGGACATCGCACCGTCGAACTTCGTGGCGATCAGCGACGGCGGCGGGCCCGCGACGGTCCGTGCAC
TGACCGACGGAACGGTCACCGCGGCGAACATCTTCAGCACCTCACCGGCCATCGAGCAGAACAACCTGGTGGTGCTGGAG
GATCCGAAGAACAACTTCCTCGCGGCCAACGTCGTGCCGCTGGTCGCCTCGCAGAAGAAGTCCGACGAGCTCAAATCGGT
GCTCGACGCGGTCAGCGCGAAACTGACGACCGAGGGCCTCATCGAACTGAACGCCGCAGTCGAAGGCAACCGCGGCGTCG
ATCCCGACGAGGCCGCGCAGAAGTGGGTGGCCGACAACGGGTTCGACAAACCCCTGACGAAGTAG

Upstream 100 bases:

>100_bases
GCCGGGCTCGCGGTGAGGGAAAGGACGGCGCGTCCGCGCGCATCCCGCTAGTGTCCGCAGGAGCCACCCGCACGAGCCCA
CCTGCCGAGAGGACTTCCGA

Downstream 100 bases:

>100_bases
GGCGCGATGATCACCTTCGAGCACATCACCAAGCGCTACCCGGACGGCACCGTGGCCGTCGACGATCTCAGTCTCGAGGT
GCCCGAGGGCACGCTGACGG

Product: glycine betaine ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MASTRRRTRWAALLVSVTLALTACGSSNPLGGGEISGDLKTVTVGSADFTESKIIAEIYAQALEANGFDISRQFGIGSRE
TYIPAVQDHSIDLIPEYTGNLLQYFDEETDVTTPDAVILGLLRALPGDLSILYPSPAEDKDTVAVSAETAQRWNLKTIGD
LAAHSPEVKFGGPSEFLNRTEGLPGLKEKYGLDIAPSNFVAISDGGGPATVRALTDGTVTAANIFSTSPAIEQNNLVVLE
DPKNNFLAANVVPLVASQKKSDELKSVLDAVSAKLTTEGLIELNAAVEGNRGVDPDEAAQKWVADNGFDKPLTK

Sequences:

>Translated_314_residues
MASTRRRTRWAALLVSVTLALTACGSSNPLGGGEISGDLKTVTVGSADFTESKIIAEIYAQALEANGFDISRQFGIGSRE
TYIPAVQDHSIDLIPEYTGNLLQYFDEETDVTTPDAVILGLLRALPGDLSILYPSPAEDKDTVAVSAETAQRWNLKTIGD
LAAHSPEVKFGGPSEFLNRTEGLPGLKEKYGLDIAPSNFVAISDGGGPATVRALTDGTVTAANIFSTSPAIEQNNLVVLE
DPKNNFLAANVVPLVASQKKSDELKSVLDAVSAKLTTEGLIELNAAVEGNRGVDPDEAAQKWVADNGFDKPLTK
>Mature_313_residues
ASTRRRTRWAALLVSVTLALTACGSSNPLGGGEISGDLKTVTVGSADFTESKIIAEIYAQALEANGFDISRQFGIGSRET
YIPAVQDHSIDLIPEYTGNLLQYFDEETDVTTPDAVILGLLRALPGDLSILYPSPAEDKDTVAVSAETAQRWNLKTIGDL
AAHSPEVKFGGPSEFLNRTEGLPGLKEKYGLDIAPSNFVAISDGGGPATVRALTDGTVTAANIFSTSPAIEQNNLVVLED
PKNNFLAANVVPLVASQKKSDELKSVLDAVSAKLTTEGLIELNAAVEGNRGVDPDEAAQKWVADNGFDKPLTK

Specific function: May be part of an ABC transporter complex involved in uptake of osmoprotectant molecules [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=280, Percent_Identity=26.0714285714286, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 33217; Mature: 33086

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTRRRTRWAALLVSVTLALTACGSSNPLGGGEISGDLKTVTVGSADFTESKIIAEIYA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
QALEANGFDISRQFGIGSRETYIPAVQDHSIDLIPEYTGNLLQYFDEETDVTTPDAVILG
HHHHCCCCCEEHHCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCHHHHHHH
LLRALPGDLSILYPSPAEDKDTVAVSAETAQRWNLKTIGDLAAHSPEVKFGGPSEFLNRT
HHHHCCCCEEEECCCCCCCCCEEEEEECHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHH
EGLPGLKEKYGLDIAPSNFVAISDGGGPATVRALTDGTVTAANIFSTSPAIEQNNLVVLE
CCCCCCHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEE
DPKNNFLAANVVPLVASQKKSDELKSVLDAVSAKLTTEGLIELNAAVEGNRGVDPDEAAQ
CCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHH
KWVADNGFDKPLTK
HHHHCCCCCCCCCC
>Mature Secondary Structure 
ASTRRRTRWAALLVSVTLALTACGSSNPLGGGEISGDLKTVTVGSADFTESKIIAEIYA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
QALEANGFDISRQFGIGSRETYIPAVQDHSIDLIPEYTGNLLQYFDEETDVTTPDAVILG
HHHHCCCCCEEHHCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCHHHHHHH
LLRALPGDLSILYPSPAEDKDTVAVSAETAQRWNLKTIGDLAAHSPEVKFGGPSEFLNRT
HHHHCCCCEEEECCCCCCCCCEEEEEECHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHH
EGLPGLKEKYGLDIAPSNFVAISDGGGPATVRALTDGTVTAANIFSTSPAIEQNNLVVLE
CCCCCCHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEE
DPKNNFLAANVVPLVASQKKSDELKSVLDAVSAKLTTEGLIELNAAVEGNRGVDPDEAAQ
CCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHH
KWVADNGFDKPLTK
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]