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The map label for this gene is cspA [H]

Identifier: 108801761

GI number: 108801761

Start: 5082364

End: 5082567

Strand: Reverse

Name: cspA [H]

Synonym: Mmcs_4798

Alternate gene names: 108801761

Gene position: 5082567-5082364 (Counterclockwise)

Preceding gene: 108801764

Following gene: 108801760

Centisome position: 89.08

GC content: 62.25

Gene sequence:

>204_bases
ATGCCACAGGGAACTGTGAAGTGGTTCAACGCGGAGAAGGGGTTCGGTTTCATCGCCCCCGAGGACGGCTCCGCAGACGT
GTTTGTCCACTACACGGAGATTCAGGGCAGCGGCTTCCGCACCCTGGAGGAGAACCAGAAGGTCGAGTTCGAGGTCGGCC
AGAGCCCCAAGGGGCCGCAAGCTACGGGTGTGCGCACCATCTAG

Upstream 100 bases:

>100_bases
TCGAGTTCCGACGACTCCACGAAGGATGGCGGTCGGAACGGGCCCGGTGTACCGAAACGGTGGACCGCACCCGGAGAAGA
AGAAAAGGAAACAACAGGAA

Downstream 100 bases:

>100_bases
TACAGCGAGCCTGAAGAAACACCCCCGCAGATCCGCGCAAACGGACCCGCGGGGGTGTTTTCGTTCTCGGTACCGGCGGT
CGCGCCTGCCGCGGGGCACT

Product: cold-shock DNA-binding family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPKGPQATGVRTI

Sequences:

>Translated_67_residues
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPKGPQATGVRTI
>Mature_66_residues
PQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPKGPQATGVRTI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=65.625, Blast_Score=93, Evalue=4e-21,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=60, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=61.5384615384615, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=60.9375, Blast_Score=85, Evalue=7e-19,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=56.25, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=60.655737704918, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=58.0645161290323, Blast_Score=81, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=50.7936507936508, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7347; Mature: 7216

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPKGPQ
CCCCCEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCEECCCCCEEEEEECCCCCCCC
ATGVRTI
CCCEECC
>Mature Secondary Structure 
PQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEVGQSPKGPQ
CCCCEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCEECCCCCEEEEEECCCCCCCC
ATGVRTI
CCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]