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The map label for this gene is ybjK [C]

Identifier: 108801532

GI number: 108801532

Start: 4846309

End: 4846920

Strand: Reverse

Name: ybjK [C]

Synonym: Mmcs_4569

Alternate gene names: 108801532

Gene position: 4846920-4846309 (Counterclockwise)

Preceding gene: 108801534

Following gene: 108801531

Centisome position: 84.95

GC content: 72.71

Gene sequence:

>612_bases
ATGCTAATCGTGACAGCAGCAGTCACTCCCAAGGGGGAACGCAGGCGGTACGCGCTGGTCAGCGCGGCCGCTGATCTGCT
GTGTGAAGGGGGATTCGACGCCGTCCGGCACCGGGCGGTGGCGCGTCGGGCCGGCCTGCCGCTGGCGTCGACGACCTACT
ACTTCTCGTCGCTCGACGACCTCATCGTCAAGGCGGTCGAATACGAGGGAAGCCGGGAGGCCGAGCGCCTGCAGCAGCGG
GTGGCGGCGTTGTCCCGGCGCCGCCGGGGCGCGGAAGCGACCGCGGACGTGTTGGTGGATCTGCTGCTCGGCGACGCGCC
CGGCACCCGCGGCGGCGAGGAGCTGATCTCCCGCTACGAGCGTTACATCGCGTGTGCCCGCCAGCCGGCGCTGCGCGACG
CCCAGCGCCGCATCCTGCGGCAGCGCACCGATGCGGTGGTCGCGGTGATGGAACGCTCCGGCCGGACGGTGCGCGCGGAC
TTCCTCACCGCCCTCGTCTGCGCCGTCGACGGTGCGGTGGTCGCTGCGCTGGTCGGCGACGGGGACGGTCCGCGCGCCAC
CGCGCGGGCCACGCTCATCGACGTCATCGACGTGCTCGCACCGGTGGGCTGA

Upstream 100 bases:

>100_bases
TCTTGCCACCGGAGCACCCCCGTGCGGTCCCCGGCCGCCCGCCTGAAGAAAGCCTGGGGTTTGCGCGAAACGACGATGCC
CAACCCGGGTGGCTGGCAGC

Downstream 100 bases:

>100_bases
GCGCAGGTCCGGCAACGATTGCGGCAATGATGCTGCGTCGAGGTCGCCGCTGCCCGATGATGATGACCTGGCAACAGTGA
CGGAGGAGCGCATGACCCAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MLIVTAAVTPKGERRRYALVSAAADLLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDDLIVKAVEYEGSREAERLQQR
VAALSRRRRGAEATADVLVDLLLGDAPGTRGGEELISRYERYIACARQPALRDAQRRILRQRTDAVVAVMERSGRTVRAD
FLTALVCAVDGAVVAALVGDGDGPRATARATLIDVIDVLAPVG

Sequences:

>Translated_203_residues
MLIVTAAVTPKGERRRYALVSAAADLLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDDLIVKAVEYEGSREAERLQQR
VAALSRRRRGAEATADVLVDLLLGDAPGTRGGEELISRYERYIACARQPALRDAQRRILRQRTDAVVAVMERSGRTVRAD
FLTALVCAVDGAVVAALVGDGDGPRATARATLIDVIDVLAPVG
>Mature_203_residues
MLIVTAAVTPKGERRRYALVSAAADLLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDDLIVKAVEYEGSREAERLQQR
VAALSRRRRGAEATADVLVDLLLGDAPGTRGGEELISRYERYIACARQPALRDAQRRILRQRTDAVVAVMERSGRTVRAD
FLTALVCAVDGAVVAALVGDGDGPRATARATLIDVIDVLAPVG

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21819; Mature: 21819

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIVTAAVTPKGERRRYALVSAAADLLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDD
CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LIVKAVEYEGSREAERLQQRVAALSRRRRGAEATADVLVDLLLGDAPGTRGGEELISRYE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
RYIACARQPALRDAQRRILRQRTDAVVAVMERSGRTVRADFLTALVCAVDGAVVAALVGD
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCC
GDGPRATARATLIDVIDVLAPVG
CCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLIVTAAVTPKGERRRYALVSAAADLLCEGGFDAVRHRAVARRAGLPLASTTYYFSSLDD
CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LIVKAVEYEGSREAERLQQRVAALSRRRRGAEATADVLVDLLLGDAPGTRGGEELISRYE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
RYIACARQPALRDAQRRILRQRTDAVVAVMERSGRTVRADFLTALVCAVDGAVVAALVGD
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCC
GDGPRATARATLIDVIDVLAPVG
CCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA