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The map label for this gene is ygaV [C]

Identifier: 108801280

GI number: 108801280

Start: 4587784

End: 4588152

Strand: Reverse

Name: ygaV [C]

Synonym: Mmcs_4316

Alternate gene names: 108801280

Gene position: 4588152-4587784 (Counterclockwise)

Preceding gene: 108801283

Following gene: 108801279

Centisome position: 80.42

GC content: 69.11

Gene sequence:

>369_bases
GTGCACGAGGATCCGCCCGAACAGCCGCTCTACGAGATCAAGGCGAATCTGTTCAAGGCGCTGGCCCACCCCGCGCGGAT
CCGCATCCTCGAGGTGCTCAGCGCCGGGGAGCAGCCCACCCCGGTCAGCGAGATGCTGGCGGCGATCGACGTCGAACCCA
CCGTGCTCTCCCAGCACCTCGCCGTGCTCAAACGCCACCACGTCGTCAGCGCGCAGCGCAGCGGGAACGCCGTCTACTAC
CGGCTCGCTCACCCGAAGATCCGCGAACTGCTGGTGATCGCGCGGACGTTCCTGGCCGACACCCTCGACGCCCAGCGCGC
CCAACTCGACACGCTGGCGTCGCTGCCACCGCTGCGGTCCGACTCGTGA

Upstream 100 bases:

>100_bases
CCGACGCCGTCGGGGGAAACGGTCCGATCGGCCGCTATGCTGGATTGCGAATTGATGCAATTCATCAATCGGTCAATCCA
TTCACACCGAAGGCGTCACA

Downstream 100 bases:

>100_bases
ACCCCGCACGGTTGCTGCCCCGCCGGTCCGACTACGCCGACCTGCCGACCTCCTGGCGGCGCGACGTGCTGGCGGGGGTC
ACCGTCGGCGTGGTCGCCCT

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MHEDPPEQPLYEIKANLFKALAHPARIRILEVLSAGEQPTPVSEMLAAIDVEPTVLSQHLAVLKRHHVVSAQRSGNAVYY
RLAHPKIRELLVIARTFLADTLDAQRAQLDTLASLPPLRSDS

Sequences:

>Translated_122_residues
MHEDPPEQPLYEIKANLFKALAHPARIRILEVLSAGEQPTPVSEMLAAIDVEPTVLSQHLAVLKRHHVVSAQRSGNAVYY
RLAHPKIRELLVIARTFLADTLDAQRAQLDTLASLPPLRSDS
>Mature_122_residues
MHEDPPEQPLYEIKANLFKALAHPARIRILEVLSAGEQPTPVSEMLAAIDVEPTVLSQHLAVLKRHHVVSAQRSGNAVYY
RLAHPKIRELLVIARTFLADTLDAQRAQLDTLASLPPLRSDS

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 13559; Mature: 13559

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEDPPEQPLYEIKANLFKALAHPARIRILEVLSAGEQPTPVSEMLAAIDVEPTVLSQHL
CCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
AVLKRHHVVSAQRSGNAVYYRLAHPKIRELLVIARTFLADTLDAQRAQLDTLASLPPLRS
HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DS
CC
>Mature Secondary Structure
MHEDPPEQPLYEIKANLFKALAHPARIRILEVLSAGEQPTPVSEMLAAIDVEPTVLSQHL
CCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
AVLKRHHVVSAQRSGNAVYYRLAHPKIRELLVIARTFLADTLDAQRAQLDTLASLPPLRS
HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]