| Definition | Mycobacterium sp. MCS chromosome, complete genome. |
|---|---|
| Accession | NC_008146 |
| Length | 5,705,448 |
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The map label for this gene is yxlA [H]
Identifier: 108801149
GI number: 108801149
Start: 4448650
End: 4450080
Strand: Reverse
Name: yxlA [H]
Synonym: Mmcs_4185
Alternate gene names: 108801149
Gene position: 4450080-4448650 (Counterclockwise)
Preceding gene: 108801151
Following gene: 108801148
Centisome position: 78.0
GC content: 69.04
Gene sequence:
>1431_bases ATGTCCGCTGTCGCCACCGGTGAACCGGCCCCCGAGGTCACCGAGCGCCTCGAATCCGACCTCACCGTCATCCCGGAGTC CGGACGGACGACCGACGTACGCGGTCAGTTCTGGATCTGGGCGGGGGCCAACATCGCGCCGATCAACTGGGTCCTCGGCG CCCTCGGCGTCACTATGGGCCTGGGTCTGTGGGAGACGATCGCCGTTCTCGCGGTCGGCAACCTGATCGGGATGTCGCTG TTCGGCATCTTCGTCGTGATCGGCCAGCGCACCGGGGTCACGGGAATGGTGCTGTCCCGGGCCATCTTCGGCCGCCGCGG CGCCTACGTGCCCGCCGCCGTCCAGGCGGTCGTGTGCATGGGGTGGTGCGCGGTGAACACCTGGATCGTGCTCGACCTGG TGATGGCGCTGCTCGGGCGCATCGGCATCGCCGATCCCGACAGCACCGCACACGGTCCGCGGATCGTGGTGGGTGCCGTC ATCATGGTCATCCAGGTGGTGATCGCCTGGTTCGGCTACCGGGTGATCGCGGCGTTCGAACGCTGGACCGTGCCGCCGAC CGTGGCGATCCTGGTCGCGATGACGGCGGTCGCCTGGTTCGGCCTCGACGTCGAATGGGGTTACGCCGGTGATGCGGCAC TGACCACCGGAGAGCACATCGCCGCCCTGTCGGCCGTGATGACCGCCATCGGAATCGGCTGGGGCATCACCTGGTTCGGC TACGCCGGCGACTACTCGCGGTTCGTGTCCACCACCGTGCCCGCCCGCAAACTCTTCGTGGCCAGTGCGCTGGGCCAGTT CATCCCGGTCCTCTGGCTGGGCGCCCTGGGTGCGACGCTGGCGACGCTCAGCTCGTCCGCGGATCCGGGCGAGATCATCG TCGACGCCTACGGCGCGCTGGCCATCCCCGTCCTGCTGCTCGTCGTCCATGGACCGCTGGCCACCAACATCCTCAACATC TACACGTGCACGGTGTCGACCCAGGCGCTCGACATCCACATCAACCGCCGCATCCTCAACCTGGTCATCGGCGCCGTCGC CATGGTCGGGGTCGTGCTCTTCGTGCTCAACGGCGACTTCGCGCTGATGATCGACAGCTGGCTGGTCGGCATCGTCGGCT GGGTGGCGCCGTGGGCCGCGGTGGTTCTGGTGCACTGGTTCGTGATCGCGCGCCGCGAGGTCGACCCCGAGGCGCTCCTG GCGCCGCCCGGCGCGGGGCTGCTGCCGACGGTGCGGCCGACCGCCCTGGTGGCACTGGGTGTCGGCATCCTCTTCACCTG GATGTTCATGTACGGCATGACACCGCTGCTGCAGGGGCCGGTCGCGAGCGCGCTGGGCGGCGTCGACCTGTCGTGGCTGG CCGGCGGAATCGCCGCGGCGGGTACCTATCTTGCACTGGAGGCGATCCGCGGGCGGCAACTGCAGAAGTGA
Upstream 100 bases:
>100_bases GTGAACGTGCGATGTAAAACTATCGGGGATTGTCACCACATCGCTCAAGGATGGACACCGCAACGGCGCGGCTGACCTCT TTCGGAGAACAGGAACCGCC
Downstream 100 bases:
>100_bases TGTCACCGGATGGCGCTAACGTCCGTCCCATGAGTCACCGACTTGTGCGCATCTATCGCGAGGGGCGAGCGGCGTACCCC CACACCATCGACTGCCCCTA
Product: cytosine/purines, uracil, thiamine, allantoin permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 476; Mature: 475
Protein sequence:
>476_residues MSAVATGEPAPEVTERLESDLTVIPESGRTTDVRGQFWIWAGANIAPINWVLGALGVTMGLGLWETIAVLAVGNLIGMSL FGIFVVIGQRTGVTGMVLSRAIFGRRGAYVPAAVQAVVCMGWCAVNTWIVLDLVMALLGRIGIADPDSTAHGPRIVVGAV IMVIQVVIAWFGYRVIAAFERWTVPPTVAILVAMTAVAWFGLDVEWGYAGDAALTTGEHIAALSAVMTAIGIGWGITWFG YAGDYSRFVSTTVPARKLFVASALGQFIPVLWLGALGATLATLSSSADPGEIIVDAYGALAIPVLLLVVHGPLATNILNI YTCTVSTQALDIHINRRILNLVIGAVAMVGVVLFVLNGDFALMIDSWLVGIVGWVAPWAAVVLVHWFVIARREVDPEALL APPGAGLLPTVRPTALVALGVGILFTWMFMYGMTPLLQGPVASALGGVDLSWLAGGIAAAGTYLALEAIRGRQLQK
Sequences:
>Translated_476_residues MSAVATGEPAPEVTERLESDLTVIPESGRTTDVRGQFWIWAGANIAPINWVLGALGVTMGLGLWETIAVLAVGNLIGMSL FGIFVVIGQRTGVTGMVLSRAIFGRRGAYVPAAVQAVVCMGWCAVNTWIVLDLVMALLGRIGIADPDSTAHGPRIVVGAV IMVIQVVIAWFGYRVIAAFERWTVPPTVAILVAMTAVAWFGLDVEWGYAGDAALTTGEHIAALSAVMTAIGIGWGITWFG YAGDYSRFVSTTVPARKLFVASALGQFIPVLWLGALGATLATLSSSADPGEIIVDAYGALAIPVLLLVVHGPLATNILNI YTCTVSTQALDIHINRRILNLVIGAVAMVGVVLFVLNGDFALMIDSWLVGIVGWVAPWAAVVLVHWFVIARREVDPEALL APPGAGLLPTVRPTALVALGVGILFTWMFMYGMTPLLQGPVASALGGVDLSWLAGGIAAAGTYLALEAIRGRQLQK >Mature_475_residues SAVATGEPAPEVTERLESDLTVIPESGRTTDVRGQFWIWAGANIAPINWVLGALGVTMGLGLWETIAVLAVGNLIGMSLF GIFVVIGQRTGVTGMVLSRAIFGRRGAYVPAAVQAVVCMGWCAVNTWIVLDLVMALLGRIGIADPDSTAHGPRIVVGAVI MVIQVVIAWFGYRVIAAFERWTVPPTVAILVAMTAVAWFGLDVEWGYAGDAALTTGEHIAALSAVMTAIGIGWGITWFGY AGDYSRFVSTTVPARKLFVASALGQFIPVLWLGALGATLATLSSSADPGEIIVDAYGALAIPVLLLVVHGPLATNILNIY TCTVSTQALDIHINRRILNLVIGAVAMVGVVLFVLNGDFALMIDSWLVGIVGWVAPWAAVVLVHWFVIARREVDPEALLA PPGAGLLPTVRPTALVALGVGILFTWMFMYGMTPLLQGPVASALGGVDLSWLAGGIAAAGTYLALEAIRGRQLQK
Specific function: Unknown
COG id: COG1457
COG function: function code F; Purine-cytosine permease and related proteins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320897, Length=325, Percent_Identity=25.5384615384615, Blast_Score=90, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6320902, Length=389, Percent_Identity=24.1645244215938, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6320903, Length=341, Percent_Identity=25.2199413489736, Blast_Score=82, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 50059; Mature: 49928
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVATGEPAPEVTERLESDLTVIPESGRTTDVRGQFWIWAGANIAPINWVLGALGVTMG CCCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH LGLWETIAVLAVGNLIGMSLFGIFVVIGQRTGVTGMVLSRAIFGRRGAYVPAAVQAVVCM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH GWCAVNTWIVLDLVMALLGRIGIADPDSTAHGPRIVVGAVIMVIQVVIAWFGYRVIAAFE HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RWTVPPTVAILVAMTAVAWFGLDVEWGYAGDAALTTGEHIAALSAVMTAIGIGWGITWFG HCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCC YAGDYSRFVSTTVPARKLFVASALGQFIPVLWLGALGATLATLSSSADPGEIIVDAYGAL CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHH AIPVLLLVVHGPLATNILNIYTCTVSTQALDIHINRRILNLVIGAVAMVGVVLFVLNGDF HHHHHHHHHCCHHHHHHEEEEEEEEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCH ALMIDSWLVGIVGWVAPWAAVVLVHWFVIARREVDPEALLAPPGAGLLPTVRPTALVALG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCHHHHHHHH VGILFTWMFMYGMTPLLQGPVASALGGVDLSWLAGGIAAAGTYLALEAIRGRQLQK HHHHHHHHHHHCCCHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SAVATGEPAPEVTERLESDLTVIPESGRTTDVRGQFWIWAGANIAPINWVLGALGVTMG CCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH LGLWETIAVLAVGNLIGMSLFGIFVVIGQRTGVTGMVLSRAIFGRRGAYVPAAVQAVVCM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH GWCAVNTWIVLDLVMALLGRIGIADPDSTAHGPRIVVGAVIMVIQVVIAWFGYRVIAAFE HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RWTVPPTVAILVAMTAVAWFGLDVEWGYAGDAALTTGEHIAALSAVMTAIGIGWGITWFG HCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCC YAGDYSRFVSTTVPARKLFVASALGQFIPVLWLGALGATLATLSSSADPGEIIVDAYGAL CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHH AIPVLLLVVHGPLATNILNIYTCTVSTQALDIHINRRILNLVIGAVAMVGVVLFVLNGDF HHHHHHHHHCCHHHHHHEEEEEEEEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCH ALMIDSWLVGIVGWVAPWAAVVLVHWFVIARREVDPEALLAPPGAGLLPTVRPTALVALG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCHHHHHHHH VGILFTWMFMYGMTPLLQGPVASALGGVDLSWLAGGIAAAGTYLALEAIRGRQLQK HHHHHHHHHHHCCCHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]