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The map label for this gene is 108801013

Identifier: 108801013

GI number: 108801013

Start: 4319983

End: 4320564

Strand: Reverse

Name: 108801013

Synonym: Mmcs_4049

Alternate gene names: NA

Gene position: 4320564-4319983 (Counterclockwise)

Preceding gene: 108801021

Following gene: 108801012

Centisome position: 75.73

GC content: 68.21

Gene sequence:

>582_bases
GTGGCGAAACTGCAGCTTGTCCAGGATCCGGCGGCCGACGCGCTGCTCGAATCAAACCCGTTCGCGCTGCTGGTCGGCAT
GCTGCTCGATCAGCAGTACCCGATGGAGGCGGCGTTCGCCGGGCCGAAGAAGATCGCCGACCGCATGGGCGGTGTCGACG
CCCGCGAGATCGCCGAGTACGACCCCGAGAAGTTCGCCGCCCTCTGCTCGACGACGCCTGCGGTGCACCGGTTTCCCGGG
TCGATGGCCAAACGCATCCAGGCGCTGGCCCAACTGATCGTCGACCGCTACGACGGTGACGCCGCCGCGCTGTGGACCTC
GGGCGATCCCGACGGCGCCGAGGTGCTGCGCAGGCTCAAGGCGCTGCCGGGGTTCGGCGAGCAGAAGGCCAAGATCTTCC
TCGCGCTGCTGGGCAAGCAGTACGGCGTGACACCGCAGGGCTGGCGGGAGGCCGCGGGCGACTACGGCAAGGCCGGGACG
TACATGTCGATCGCCGACGTGACCGATCCGGGCGCACTCGAAAAGGTGCGCTCGTACAAGAAGCAGGCGAAGGCCGCCGC
GAAGGATCAGGCGAAGAACTGA

Upstream 100 bases:

>100_bases
CACCGCCGCCAGGACTATCGCGAGCTCGCCGGACATCTGCTGTAGGTGCTCCTCGCGTCCGCGTCACCTCACGGGTTTTC
GGCCACCTTAAACTGGCGGG

Downstream 100 bases:

>100_bases
CGCCGAGACTGCTGCCAGATCGCGATTCTCGACGAATTCGCGATCTGTGCGCAGTCTCGCTGACTCATATGCCGACGTGC
GAATAGGCTGAGGCACATGA

Product: HhH-GPD domain-containing protein

Products: NA

Alternate protein names: HhH-GPD Protein; HhH-GPD; Hhh-Gpd Family DNA Repair Protein; Base Excision DNA Repair Protein HhH-GPD Family Protein; HhH-GPD Family Base Excision DNA Repair Protein; HhH-GPD Superfamily Base Excision DNA Repair Protein

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAKLQLVQDPAADALLESNPFALLVGMLLDQQYPMEAAFAGPKKIADRMGGVDAREIAEYDPEKFAALCSTTPAVHRFPG
SMAKRIQALAQLIVDRYDGDAAALWTSGDPDGAEVLRRLKALPGFGEQKAKIFLALLGKQYGVTPQGWREAAGDYGKAGT
YMSIADVTDPGALEKVRSYKKQAKAAAKDQAKN

Sequences:

>Translated_193_residues
MAKLQLVQDPAADALLESNPFALLVGMLLDQQYPMEAAFAGPKKIADRMGGVDAREIAEYDPEKFAALCSTTPAVHRFPG
SMAKRIQALAQLIVDRYDGDAAALWTSGDPDGAEVLRRLKALPGFGEQKAKIFLALLGKQYGVTPQGWREAAGDYGKAGT
YMSIADVTDPGALEKVRSYKKQAKAAAKDQAKN
>Mature_192_residues
AKLQLVQDPAADALLESNPFALLVGMLLDQQYPMEAAFAGPKKIADRMGGVDAREIAEYDPEKFAALCSTTPAVHRFPGS
MAKRIQALAQLIVDRYDGDAAALWTSGDPDGAEVLRRLKALPGFGEQKAKIFLALLGKQYGVTPQGWREAAGDYGKAGTY
MSIADVTDPGALEKVRSYKKQAKAAAKDQAKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20731; Mature: 20600

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLQLVQDPAADALLESNPFALLVGMLLDQQYPMEAAFAGPKKIADRMGGVDAREIAEY
CCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHC
DPEKFAALCSTTPAVHRFPGSMAKRIQALAQLIVDRYDGDAAALWTSGDPDGAEVLRRLK
CHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
ALPGFGEQKAKIFLALLGKQYGVTPQGWREAAGDYGKAGTYMSIADVTDPGALEKVRSYK
HCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH
KQAKAAAKDQAKN
HHHHHHHHHCCCC
>Mature Secondary Structure 
AKLQLVQDPAADALLESNPFALLVGMLLDQQYPMEAAFAGPKKIADRMGGVDAREIAEY
CCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHC
DPEKFAALCSTTPAVHRFPGSMAKRIQALAQLIVDRYDGDAAALWTSGDPDGAEVLRRLK
CHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
ALPGFGEQKAKIFLALLGKQYGVTPQGWREAAGDYGKAGTYMSIADVTDPGALEKVRSYK
HCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH
KQAKAAAKDQAKN
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA