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The map label for this gene is ycjO [C]

Identifier: 108800946

GI number: 108800946

Start: 4248181

End: 4249107

Strand: Reverse

Name: ycjO [C]

Synonym: Mmcs_3982

Alternate gene names: 108800946

Gene position: 4249107-4248181 (Counterclockwise)

Preceding gene: 108800947

Following gene: 108800945

Centisome position: 74.47

GC content: 66.45

Gene sequence:

>927_bases
GTGACGGCCACCGCAGCGCCCGCCCCGCCGACCGAGGTGCGCGGCGGCAGCGACGACTCCCGTTCGGACCGCCGGCTGGC
CTTCATGCTGATCGCCCCGGCGGTCGTGCTCATGCTCGCGGTGACCGCCTATCCGATCGGGTACGCGGTGTGGCTCAGCC
TGCAGCGCTACAACCTCGCCGAACCCAGTGACACCGAATTCGTCGGGTTGTCGAACTATGTCACGGTCCTGAGCGACCAA
TACTGGTGGACCGCGTTCGCCGTCACCTTGGCGATCACCGTCGTCTCGGTCGCGATCGAGTTCGTGCTCGGGATGGCCCT
GGCCTTGGTGATGCACCGGACCATCTTCGGCAAGGGGGTGGTGCGCACGGCGATCCTGGTCCCGTACGGCATCGTCACCG
TCGCGGCCTCCTACAGCTGGTACTACGCGTGGACGCCCGGCACCGGATACCTGGCCAACCTGCTGCCGGAGGGCAGCGCG
CCGCTGACGGAGCAGCTGCCGTCGCTGGCCATCGTGGTGCTCGCCGAGGTGTGGAAGACGACGCCGTTCATGGCGCTGCT
GTTGCTGTCGGGGCTCGCGCTGGTGCCGCAGGATCTGCTCAACGCCGCCCAGATGGACGGTGCGGGGCCGTGGAAGCGGC
TGGTGAAGGTCATCCTGCCGCTGATCAAACCGGCCATCCTGGTGGCGCTGCTGTTCCGCACGCTGGACGCGTTCCGGATC
TTCGACAACATCTACATCCTCACCGGCGGCGCCAACAACACCGGGTCGGTGTCGATCCTGGGCTACGACAACTTGTTCAA
GGCGTTCAACCTCGGGCTCGGCTCGGCGCTCAGCGTCTTGATATTCCTGTGCGTGGCGATCATCGCGTTCATCTACATCA
AGCTGTTCGGAGCGTCTGCGCCCGGCTCGGACGAGGAGAGGCGTTAG

Upstream 100 bases:

>100_bases
CGGTGACGCTGGCACCGATATCGGACATCGATCCGGAACGGACCGCCGATGAACTCACCGAGCAGGTCCAGAAGGCCATC
GACGGCAAGGGGTTGATCCC

Downstream 100 bases:

>100_bases
ATGAACGAGCGGGTGACCGCCGGTCGCGCGAGCGGATGGGCCGTCGTGAACATCCTCGTGGTGATCTACGCGCTGCTGCC
GGTGCTGTGGATCCTGAGCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MTATAAPAPPTEVRGGSDDSRSDRRLAFMLIAPAVVLMLAVTAYPIGYAVWLSLQRYNLAEPSDTEFVGLSNYVTVLSDQ
YWWTAFAVTLAITVVSVAIEFVLGMALALVMHRTIFGKGVVRTAILVPYGIVTVAASYSWYYAWTPGTGYLANLLPEGSA
PLTEQLPSLAIVVLAEVWKTTPFMALLLLSGLALVPQDLLNAAQMDGAGPWKRLVKVILPLIKPAILVALLFRTLDAFRI
FDNIYILTGGANNTGSVSILGYDNLFKAFNLGLGSALSVLIFLCVAIIAFIYIKLFGASAPGSDEERR

Sequences:

>Translated_308_residues
MTATAAPAPPTEVRGGSDDSRSDRRLAFMLIAPAVVLMLAVTAYPIGYAVWLSLQRYNLAEPSDTEFVGLSNYVTVLSDQ
YWWTAFAVTLAITVVSVAIEFVLGMALALVMHRTIFGKGVVRTAILVPYGIVTVAASYSWYYAWTPGTGYLANLLPEGSA
PLTEQLPSLAIVVLAEVWKTTPFMALLLLSGLALVPQDLLNAAQMDGAGPWKRLVKVILPLIKPAILVALLFRTLDAFRI
FDNIYILTGGANNTGSVSILGYDNLFKAFNLGLGSALSVLIFLCVAIIAFIYIKLFGASAPGSDEERR
>Mature_307_residues
TATAAPAPPTEVRGGSDDSRSDRRLAFMLIAPAVVLMLAVTAYPIGYAVWLSLQRYNLAEPSDTEFVGLSNYVTVLSDQY
WWTAFAVTLAITVVSVAIEFVLGMALALVMHRTIFGKGVVRTAILVPYGIVTVAASYSWYYAWTPGTGYLANLLPEGSAP
LTEQLPSLAIVVLAEVWKTTPFMALLLLSGLALVPQDLLNAAQMDGAGPWKRLVKVILPLIKPAILVALLFRTLDAFRIF
DNIYILTGGANNTGSVSILGYDNLFKAFNLGLGSALSVLIFLCVAIIAFIYIKLFGASAPGSDEERR

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=276, Percent_Identity=31.5217391304348, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789861, Length=285, Percent_Identity=28.4210526315789, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1790465, Length=260, Percent_Identity=26.5384615384615, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33185; Mature: 33054

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATAAPAPPTEVRGGSDDSRSDRRLAFMLIAPAVVLMLAVTAYPIGYAVWLSLQRYNLA
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EPSDTEFVGLSNYVTVLSDQYWWTAFAVTLAITVVSVAIEFVLGMALALVMHRTIFGKGV
CCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VRTAILVPYGIVTVAASYSWYYAWTPGTGYLANLLPEGSAPLTEQLPSLAIVVLAEVWKT
HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
TPFMALLLLSGLALVPQDLLNAAQMDGAGPWKRLVKVILPLIKPAILVALLFRTLDAFRI
CHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDNIYILTGGANNTGSVSILGYDNLFKAFNLGLGSALSVLIFLCVAIIAFIYIKLFGASA
HCCEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PGSDEERR
CCCCCCCC
>Mature Secondary Structure 
TATAAPAPPTEVRGGSDDSRSDRRLAFMLIAPAVVLMLAVTAYPIGYAVWLSLQRYNLA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EPSDTEFVGLSNYVTVLSDQYWWTAFAVTLAITVVSVAIEFVLGMALALVMHRTIFGKGV
CCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
VRTAILVPYGIVTVAASYSWYYAWTPGTGYLANLLPEGSAPLTEQLPSLAIVVLAEVWKT
HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
TPFMALLLLSGLALVPQDLLNAAQMDGAGPWKRLVKVILPLIKPAILVALLFRTLDAFRI
CHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDNIYILTGGANNTGSVSILGYDNLFKAFNLGLGSALSVLIFLCVAIIAFIYIKLFGASA
HCCEEEEECCCCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PGSDEERR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]